RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SNX2O60749 519 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 HADHAP40939 763 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ADSSL1Q8N142 457 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 HSPH1Q92598 858 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 FAF2Q96CS3 445 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 CCSER1Q9C0I3 900 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 AARSP49588 968 aaKnown RBP eCLIP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 MXI1P50539 228 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 CCDC142Q17RM4 750 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 KIAA0825Q8IV33 1275 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ADAMTS1Q9UHI8 967 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 HPCAL4Q9UM19 191 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 TAF6LQ9Y6J9 622 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 A0A1W2PQJ5 194 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 MEIS1O00470 390 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 COPS2P61201 443 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 SYNE4Q8N205 404 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ZSCAN32Q9NX65 697 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 GOLGA8MH3BSY2 632 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 HNRNPLLQ8WVV9 542 aaKnown RBP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 AS3MTQ9HBK9 375 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ZNF233A6NK53 670 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 PODXLO00592 558 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 RBBP7Q16576 425 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 MAP3K14Q99558 947 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 VCPP55072 806 aaKnown RBP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 XRN1Q8IZH2 1706 aaKnown RBP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ALKBH8Q96BT7 664 aaKnown RBP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 CXorf56Q9H5V9 222 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 SLITRK6Q9H5Y7 841 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 F8W8V4 182 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 PIK3R2O00459 728 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 CLIC2O15247 247 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 BMP3P12645 472 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ALAS1P13196 640 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 C7orf25Q9BPX7 421 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 TRIM9Q9C026 710 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 CPSF3Q9UKF6 684 aaKnown RBP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ITM2BQ9Y287 266 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 SRGNP10124 158 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 DEFA1P59665 94 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 DEFA3P59666 94 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 TSPY1Q01534 308 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 ABHD8Q96I13 439 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 TAF1DQ9H5J8 278 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 STMN3Q9NZ72 180 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 SEPT9Q9UHD8 586 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-201ENST00000295550 SNX12Q9UMY4 172 aa10.45□□□□□ -0.74
COL6A3-201ENST00000295550 TBC1D4O60343 1298 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SEC24DO94855 1032 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 TFAMQ00059 246 aaKnown RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 GUCY1A3Q02108 690 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 FAM160B1Q5W0V3 765 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 MEGF6O75095 1541 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 GYPCP04921 128 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 CSF1RP07333 972 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 FBXW4P57775 412 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 PATL1Q86TB9 770 aaKnown RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 CDR2LQ86X02 465 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 OTULINQ96BN8 352 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 COQ7Q99807 217 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 GJA3Q9Y6H8 435 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SERPINB3P29508 390 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 OTUB1Q96FW1 271 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SYTL2Q9HCH5 934 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 PI4KBQ9UBF8 816 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SLC12A6Q9UHW9 1150 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 RHOBTB3O94955 611 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SIX6OS1Q8N1H7 587 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 FAM149B1Q96BN6 582 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 FAM193BQ96PV7 902 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 EPN3Q9H201 632 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 PSD3Q9NYI0 1048 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 KPNA7A9QM74 516 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 TCP11X1B4DZS4 312 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SRGAP2CP0DJJ0 459 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 KLC1Q07866 573 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 CYLC2Q14093 348 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 EPB41L4AQ9HCS5 686 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 IMPG1Q17R60 797 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SPEF2Q9C093 1822 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 CFAP69A5D8W1 941 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 ZSCAN20P17040 1043 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 PPARGP37231 505 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-201ENST00000295550 PDIA5Q14554 519 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 INPP5AQ14642 412 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 ARL13BQ3SXY8 428 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 RFX8Q6ZV50 586 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 CCNYL1Q8N7R7 359 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 PGM1P36871 562 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 TFDP1Q14186 410 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 FAM180AQ6UWF9 173 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SLC26A7Q8TE54 656 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 AURKCQ9UQB9 309 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 PEAK1Q9H792 1746 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 SLC9A1P19634 815 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 RAB14P61106 215 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 KLHL38Q2WGJ6 581 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 CCDC103Q8IW40 242 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms