RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 PPP1R12AO14974 1030 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 PRPF4O43172 522 aaKnown RBP eCLIP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 GUCY1A2P33402 732 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 FBXW4P57775 412 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 CACNB2Q08289 660 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 FOXD4Q12950 439 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 GPS1Q13098 491 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 ZNF746Q6NUN9 644 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 LPAR1Q92633 364 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 PHF20Q9BVI0 1012 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 VPS11Q9H270 941 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 ACTR5Q9H9F9 607 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 SPON1Q9HCB6 807 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 PTPRMP28827 1452 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 KIAA0391O15091 583 aaKnown RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 RTN2O75298 545 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 PPFIA2O75334 1257 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 KCNJ6P48051 423 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 CLCN6P51797 869 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 ZNF211Q13398 564 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 COG2Q14746 738 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 SNX17Q15036 470 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 ANKRD40Q6AI12 368 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 SUN2Q9UH99 717 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 TRIM33Q9UPN9 1127 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 KRT38O76015 456 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 MRPS25P82663 173 aaKnown RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 TRIM59Q8IWR1 403 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 RHOT1Q8IXI2 618 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 CCDC138Q96M89 665 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 OSBPL9Q96SU4 736 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.24□□□□□ -0.933e-8■■□□□ 12.4
PTCD3-201ENST00000254630 TRIM55Q9BYV6 548 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 TMEM60Q9H2L4 133 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 SMARCAD1Q9H4L7 1026 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 AFF4Q9UHB7 1163 aaKnown RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 CDK17Q00537 523 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 KCNA1Q09470 495 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 NR1H3Q13133 447 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 TMEM132DQ14C87 1099 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 ZNF467Q7Z7K2 595 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 ZNF34Q8IZ26 560 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 ASIC4Q96FT7 647 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 TNIP3Q96KP6 325 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 TRIM4Q9C037 500 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 NDFIP2Q9NV92 336 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 MTMR4Q9NYA4 1195 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 MMEP08473 750 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 MAP2K2P36507 400 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 SEMA3FQ13275 785 aa9.24□□□□□ -0.93
PTCD3-201ENST00000254630 CAPRIN1Q14444 709 aaKnown RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 UPF3AQ9H1J1 476 aaKnown RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 FBXO2Q9UK22 296 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 TTC7AQ9ULT0 858 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 FAF1Q9UNN5 650 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 USP42Q9H9J4 1324 aaKnown RBP9.24□□□□□ -0.93
PTCD3-201ENST00000254630 HNRNPCL2B2RXH8 293 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 RASA4BC9J798 803 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 RASA4O43374 803 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 HNRNPCL1O60812 293 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 IRF1P10914 325 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ZNF543Q08ER8 600 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ZNF235Q14590 738 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 SBK1Q52WX2 424 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 NFRKBQ6P4R8 1299 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 EMBQ6PCB8 327 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 HAUS6Q7Z4H7 955 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 SGMS1Q86VZ5 419 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 SPATA17Q96L03 361 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TRIM45Q9H8W5 580 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 MYOZ2Q9NPC6 264 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TJP2Q9UDY2 1190 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ITM2BQ9Y287 266 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 PDS5AQ29RF7 1337 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 FRMD3A2A2Y4 597 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TRPA1O75762 1119 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TRIM49P0CI25 452 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TRIM49CP0CI26 452 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 NMT1P30419 496 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 EMC2Q15006 297 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 R3HDM1Q15032 1099 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ANGEL2Q5VTE6 544 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 SHC4Q6S5L8 630 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TMEM143Q96AN5 459 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 A0A0G2JND7 137 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TADA2AO75478 443 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 CYBBP04839 570 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 CHRNA3P32297 505 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 RFC5P40937 340 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TPI1P60174 286 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 TAF1CQ15572 869 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 LMBRD2Q68DH5 695 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 BARGINQ6ZT62 677 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 CXorf38Q8TB03 319 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 FAM96AQ9H5X1 160 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 APOBEC2Q9Y235 224 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ENTPD3O75355 529 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 PDIA2Q13087 525 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ARID5BQ14865 1188 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 CC2D1AQ6P1N0 951 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms