RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ECEL1O95672 775 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 CHRNA3P32297 505 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 PEX5P50542 639 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 SIK1P57059 783 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 SLMAPQ14BN4 828 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 SEPT2Q15019 361 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 KHDC1Q4VXA5 237 aaKnown RBP15.38■□□□□ 0.05
SDC1-201ENST00000254351 ISLR2Q6UXK2 745 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 MYCT1Q8N699 235 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 RAB3IPQ96QF0 476 aaPredicted RBP15.38■□□□□ 0.05
SDC1-201ENST00000254351 CAMTA2O94983 1202 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 GJB6O95452 261 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 TMEM253P0C7T8 217 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 LMNB1P20700 586 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 ITGA8P53708 1063 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 KLC1Q07866 573 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 TAF1BQ53T94 588 aaPredicted RBP15.37■□□□□ 0.05
SDC1-201ENST00000254351 EPM2AIP1Q7L775 607 aaPredicted RBP15.37■□□□□ 0.05
SDC1-201ENST00000254351 FRMD5Q7Z6J6 570 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 FBXO33Q7Z6M2 555 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 NPHS2Q9NP85 383 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 CCDC87Q9NVE4 849 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 PASKQ96RG2 1323 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 TISP43B9A030 160 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 CALUO43852 315 aaPredicted RBP15.37■□□□□ 0.05
SDC1-201ENST00000254351 TBCAO75347 108 aaKnown RBP15.37■□□□□ 0.05
SDC1-201ENST00000254351 PRKCIP41743 596 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 SSR1P43307 286 aaKnown RBP15.37■□□□□ 0.05
SDC1-201ENST00000254351 JAM2P57087 298 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 ICA1Q05084 483 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 LAMB3Q13751 1172 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 EPC2Q52LR7 807 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 SGO2Q562F6 1265 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 INTS5Q6P9B9 1019 aaKnown RBP15.37■□□□□ 0.05
SDC1-201ENST00000254351 CYP2W1Q8TAV3 490 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 AAASQ9NRG9 546 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 BSDC1Q9NW68 430 aaPredicted RBP15.37■□□□□ 0.05
SDC1-201ENST00000254351 PHTF1Q9UMS5 762 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 ASTN1O14525 1302 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 TAC1P20366 129 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 USH1GQ495M9 461 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 ZFYVE27Q5T4F4 411 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 RPUSD2Q8IZ73 545 aaKnown RBP15.37■□□□□ 0.05
SDC1-201ENST00000254351 ADGRF4Q8IZF3 695 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 SH2D3AQ9BRG2 576 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 UBN1Q9NPG3 1134 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 CYP39A1Q9NYL5 469 aa15.37■□□□□ 0.05
SDC1-201ENST00000254351 CCDC88AQ3V6T2 1871 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 C2orf71A6NGG8 1288 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 ETS2P15036 469 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 KRT15P19012 456 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 SSTR3P32745 418 aaPredicted RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 BTDP43251 543 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 RPS8P62241 208 aaKnown RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 LLGL2Q6P1M3 1020 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 CEP120Q8N960 986 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 ZSWIM1Q9BR11 485 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 DNAJC18Q9H819 358 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 CNOT7Q9UIV1 285 aaKnown RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 TTC7AQ9ULT0 858 aaPredicted RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 DNM3Q9UQ16 869 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 CFAP69A5D8W1 941 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 GOLGA8RI6L899 631 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 SMAPO00193 183 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 KRT36O76013 467 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 GNAZP19086 355 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 SP100P23497 879 aaPredicted RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 CPA2P48052 419 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 RCN1Q15293 331 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 CERKLQ49MI3 558 aaPredicted RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 CWF19L1Q69YN2 538 aaKnown RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 PHLDB3Q6NSJ2 640 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 DSTYKQ6XUX3 929 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 MTDHQ86UE4 582 aaKnown RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 SCYL3Q8IZE3 742 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 KLF6Q99612 283 aaPredicted RBP15.36■□□□□ 0.05
SDC1-201ENST00000254351 TXLNGQ9NUQ3 528 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 NMRK1Q9NWW6 199 aa15.36■□□□□ 0.05
SDC1-201ENST00000254351 hCG_2014768A0A024R1R8 64 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 PODXLO00592 558 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 SLC12A3P55017 1021 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 WDR4P57081 412 aaKnown RBP15.35■□□□□ 0.05
SDC1-201ENST00000254351 TSNAXIP1Q2TAA8 658 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 DPP8Q6V1X1 898 aaPredicted RBP15.35■□□□□ 0.05
SDC1-201ENST00000254351 PTF1AQ7RTS3 328 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 LRRC8CQ8TDW0 803 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 FAM84AQ96KN4 292 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 LZTS2Q9BRK4 669 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 MTUS1Q9ULD2 1270 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 CACNA1SQ13698 1873 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 A0A0G2JND7 137 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 FESP07332 822 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 MARSP56192 900 aaKnown RBP15.35■□□□□ 0.05
SDC1-201ENST00000254351 DLG4P78352 724 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 EDRF1Q3B7T1 1238 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 KRT27Q7Z3Y8 459 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 TPH2Q8IWU9 490 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 ART4Q93070 314 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 CCDC134Q9H6E4 229 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 ZNF831Q5JPB2 1677 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms