RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Apol9aQ8VDU3 310 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Klhl28Q9CR40 571 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Tmed10Q9D1D4 219 aaKnown RBP12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Tekt1Q9DAJ2 418 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Nme3Q9WV85 169 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 A0A1Y7VP24 259 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gm3182K7N6T8 263 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Adssl1P28650 457 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Nfe2l2Q60795 597 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gid8Q9D7M1 228 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Pidd1Q9ERV7 915 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Dcun1d1Q9QZ73 259 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 CdylQ9WTK2 593 aa12.59□□□□□ -0.39
Trim56-201ENSMUST00000054384 Znf711A2ANX9 761 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Tmem132bF7BAB2 1078 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gm379J3QQ19 296 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Pou6f1Q07916 301 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Sh3gl2Q62420 352 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Tbc1d12Q6A039 696 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Drap1Q9D6N5 205 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ehd4Q9EQP2 541 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Rnf4Q9QZS2 194 aa12.58□□□□□ -0.39
Trim56-201ENSMUST00000054384 Uggt1Q6P5E4 1551 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Erbb3Q61526 1339 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Snx12O70493 165 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Smad1P70340 465 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Dync1li2Q6PDL0 492 aaKnown RBP12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Tcp10aQ80W76 438 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Zbed4Q80WQ9 1168 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Dpp9Q8BVG4 862 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 ParvaQ9EPC1 372 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Iars2Q8BIJ6 1012 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Tmem120aQ8C1E7 343 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Rabgap1lA6H6A9 815 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Eef2kO08796 724 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Krt35Q497I4 455 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Sh3gl1Q62419 368 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Tmem63cQ8CBX0 802 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Gpc3Q8CFZ4 579 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Sulf1Q8K007 870 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Tk2Q9R088 270 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Rufy4Q3TYX8 563 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Znf618Q80YY7 953 aaKnown RBP12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Slc6a15Q8BG16 729 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Scrn2Q8VCA8 425 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 ChiaQ91XA9 473 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Creld2Q9CYA0 350 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 PygmQ9WUB3 842 aaKnown RBP12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Serpinb9O08797 374 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Aco1P28271 889 aaKnown RBP12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 GckP52792 465 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Col6a1Q04857 1025 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Fam107aQ78TU8 144 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 TbckQ8BM85 762 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 PigoQ9JJI6 1093 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 C1qtnf1Q9QXP7 281 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Dnajc12Q9R022 198 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 HaspinQ9Z0R0 754 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Myh7Q91Z83 1935 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 LtkP08923 888 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Cdo1P60334 200 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Plekha8Q80W71 519 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Spata21Q8BHW6 681 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Appl1Q8K3H0 707 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Ccdc130Q9D516 385 aa12.58□□□□□ -0.4
Trim56-201ENSMUST00000054384 Gm3187M0QWW3 260 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Fam83bQ0VBM2 1012 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Fam92bQ3V2J0 292 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Klhl12Q8BZM0 568 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 IkbipQ9DBZ1 373 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Pum3Q8BKS9 647 aaKnown RBP12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Arid5bQ8BM75 1188 aaKnown RBP12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 HadhaQ8BMS1 763 aaKnown RBP12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Spata32Q8C5V0 334 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Pphln1Q8K2H1 381 aaKnown RBP12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Zfp566Q8VCI1 386 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Cyp39a1Q9JKJ9 470 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Mif4gdQ3UBZ5 222 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Dhx40Q6PE54 779 aaKnown RBP12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Bsdc1Q80Y55 427 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Polr3fQ921X6 316 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Khdc3Q9CWU5 440 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Qrich1Q3UA37 777 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Mageb18Q8BQR7 327 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Bpifb6Q8BU51 449 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Gins4Q99LZ3 223 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Nr1i3O35627 358 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Nr5a1P33242 462 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Snap25P60879 206 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Rundc3bQ6PDC0 408 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Trim52Q8CDV4 233 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Utp6Q8VCY6 597 aaKnown RBP12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Trim12aQ99PQ1 284 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Olfr711Q9EPG2 314 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Aff4Q9ESC8 1160 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Ccz1Q8C1Y8 480 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Serpina1eQ00898 413 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Atl2Q6PA06 583 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Trim33Q99PP7 1142 aa12.57□□□□□ -0.4
Trim56-201ENSMUST00000054384 Trim13Q9CYB0 407 aa12.57□□□□□ -0.4
Retrieved 100 of 22,080 RNA–protein pairs in 28.9 ms