RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	YNL092W	P53934	400 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	OCA2	P53949	197 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	RHO4	Q00246	291 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	TPS1	Q00764	495 aa	Known RBP	2.09	□□□□□ -2.07
CLN3	YAL040C	SED5	Q01590	340 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	CTL1	Q03220	320 aa	Known RBP	2.09	□□□□□ -2.07
CLN3	YAL040C	SPO77	Q06134	477 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	IPK1	Q06667	281 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	MDM36	Q06820	579 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	RSA1	Q08932	381 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	MMT2	Q08970	484 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	VIK1	Q12045	647 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	YPL119C-A	Q3E751	87 aa		2.09	□□□□□ -2.07
CLN3	YAL040C	COX3	P00420	269 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	SCEI	P03882	235 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	TPK3	P05986	398 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	CDC23	P16522	626 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	PET9	P18239	318 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	NUP1	P20676	1076 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	2.08	□□□□□ -2.08	not detected
CLN3	YAL040C	ITR2	P30606	609 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	VPH2	P32341	215 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	CDC13	P32797	924 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	MRPL6	P32904	214 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	ELF1	P36053	145 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	ECM4	P36156	370 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	SCO2	P38072	301 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YPT10	P38146	199 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	ECM34	P38728	170 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	MNL1	P38888	796 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YHR210C	P38893	341 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YAL037W	P39728	267 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	MIT1	P40002	666 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	SPO73	P40031	143 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	MSS2	P40990	351 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	PSA1	P41940	361 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	LOH1	P47055	219 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	PAC10	P48363	199 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	RIB4	P50861	169 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	BUD17	P53727	317 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	DBP6	P53734	629 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	GOR1	P53839	350 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	MTQ1	P53944	314 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	TMA20	P89886	181 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	MRPS17	Q03246	237 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	EKI1	Q03764	534 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YMR310C	Q04867	317 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	SSQ1	Q05931	657 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	SKI7	Q08491	747 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	TGS1	Q12052	315 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YOL107W	Q12239	342 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	GLE1	Q12315	538 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YRM1	Q12340	786 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	BRR1	Q99177	341 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	STE7	P06784	515 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	CAR2	P07991	424 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	MET2	P08465	486 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	SEC62	P21825	274 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	DPB2	P24482	689 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	YCR006C	P25350	157 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	MGR1	P25573	417 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YCR100C	P25606	316 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	ARO7	P32178	256 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	UTH1	P36135	365 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	APL3	P38065	1025 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	RTC2	P38279	296 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	ICS2	P38284	255 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	GOS1	P38736	223 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	BIG1	P38813	335 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YHR122W	P38829	231 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	RCY1	P39531	840 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	SOP4	P39543	234 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	AST2	P39945	430 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	KRE29	P40026	464 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	SOK1	P40317	901 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	CFD1	P40558	293 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YGR201C	P42936	225 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	IBA57	P47158	497 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YIP4	P53093	235 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YIP5	P53108	310 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YGL114W	P53134	725 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	TPC1	P53257	314 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	VOA1	P53262	265 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	RHO3	Q00245	231 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	INP1	Q03694	420 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	CAB5	Q03941	241 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YML053C	Q04978	212 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	MDM30	Q05930	598 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	POS5	Q06892	414 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	RPN8	Q08723	338 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	RDR1	Q08904	546 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	RKI1	Q12189	258 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	YGK3	Q12222	375 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	YDR262W	Q12331	272 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	PST2	Q12335	198 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	MRX4	Q12467	430 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	DCP1	Q12517	231 aa	Predicted RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	RRP12	Q12754	1228 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	MHF1	Q3E835	90 aa		2.08	□□□□□ -2.08
CLN3	YAL040C	RIB3	Q99258	208 aa		2.08	□□□□□ -2.08

Retrieved 100 of 5,963 RNA–protein pairs in 77.2 ms