RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	PRY1	P47032	299 aa		12.53	□□□□□ -0.4
DEP1	YAL013W	MSY1	P48527	492 aa		12.53	□□□□□ -0.4
DEP1	YAL013W	PDR16	P53860	351 aa	Known RBP	12.53	□□□□□ -0.4
DEP1	YAL013W	RBS1	Q05672	457 aa	Known RBP	12.53	□□□□□ -0.4
DEP1	YAL013W	TSR2	Q06672	205 aa	Known RBP	12.53	□□□□□ -0.4
DEP1	YAL013W	YOR378W	Q08902	515 aa		12.53	□□□□□ -0.4
DEP1	YAL013W	TY1A-BL	Q12266	440 aa		12.53	□□□□□ -0.4
DEP1	YAL013W	GCN1	P33892	2672 aa	Known RBP	12.52	□□□□□ -0.41
DEP1	YAL013W	HIS3	P06633	220 aa		12.52	□□□□□ -0.41
DEP1	YAL013W	STE12	P13574	688 aa		12.52	□□□□□ -0.41
DEP1	YAL013W	UTR1	P21373	530 aa		12.52	□□□□□ -0.41
DEP1	YAL013W	CAM1	P29547	415 aa	Known RBP	12.52	□□□□□ -0.41
DEP1	YAL013W	MTH1	P35198	433 aa		12.52	□□□□□ -0.41
DEP1	YAL013W	TMA19	P35691	167 aa	Known RBP	12.52	□□□□□ -0.41
DEP1	YAL013W	SRP102	P36057	244 aa	Predicted RBP	12.52	□□□□□ -0.41
DEP1	YAL013W	PLB2	Q03674	706 aa		12.52	□□□□□ -0.41
DEP1	YAL013W	MCH4	Q08268	501 aa		12.52	□□□□□ -0.41
DEP1	YAL013W	TIR4	Q12218	487 aa	Predicted RBP	12.52	□□□□□ -0.41
DEP1	YAL013W	PBS2	P08018	668 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	YFR010W-A	P0C5N0	62 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	PDX1	P16451	410 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	MDH2	P22133	377 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	PTC6	P25646	442 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	PDR3	P33200	976 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	SDS24	P38314	527 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	MIT1	P40002	666 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	SEC24	P40482	926 aa	Known RBP	12.51	□□□□□ -0.41
DEP1	YAL013W	BNA6	P43619	295 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	NIT2	P47016	307 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	IRC18	P47056	224 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	AIM36	Q03798	255 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	PEX10	Q05568	337 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	LUC7	Q07508	261 aa	Predicted RBP	12.51	□□□□□ -0.41
DEP1	YAL013W	ATG41	Q12048	136 aa		12.51	□□□□□ -0.41
DEP1	YAL013W	BLM10	P43583	2143 aa		12.5	□□□□□ -0.41
DEP1	YAL013W	CDC9	P04819	755 aa		12.5	□□□□□ -0.41
DEP1	YAL013W	SFK1	P35735	353 aa		12.5	□□□□□ -0.41
DEP1	YAL013W	AIM3	P38266	947 aa	Known RBP	12.5	□□□□□ -0.41
DEP1	YAL013W	SLS1	P42900	643 aa		12.5	□□□□□ -0.41
DEP1	YAL013W	DOC1	P53068	250 aa		12.5	□□□□□ -0.41
DEP1	YAL013W	ARO8	P53090	500 aa	Known RBP	12.5	□□□□□ -0.41
DEP1	YAL013W	ERV29	P53337	310 aa		12.5	□□□□□ -0.41
DEP1	YAL013W	MRX8	Q05473	314 aa		12.5	□□□□□ -0.41
DEP1	YAL013W	RGC1	Q06108	1083 aa	Known RBP	12.5	□□□□□ -0.41
DEP1	YAL013W	YHR214C-E	Q8TGK0	99 aa		12.5	□□□□□ -0.41
DEP1	YAL013W	GCN4	P03069	281 aa		12.49	□□□□□ -0.41
DEP1	YAL013W	HOM6	P31116	359 aa	Known RBP	12.49	□□□□□ -0.41
DEP1	YAL013W	LYS20	P48570	428 aa	Known RBP	12.49	□□□□□ -0.41
DEP1	YAL013W	RMD9	P53140	646 aa	Known RBP	12.49	□□□□□ -0.41
DEP1	YAL013W	NMA1	Q06178	401 aa	Known RBP	12.49	□□□□□ -0.41
DEP1	YAL013W	TPO3	Q06451	622 aa		12.49	□□□□□ -0.41
DEP1	YAL013W	LYS21	Q12122	440 aa	Known RBP	12.49	□□□□□ -0.41
DEP1	YAL013W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	12.49	□□□□□ -0.41	not detected
DEP1	YAL013W	TOR1	P35169	2470 aa		12.49	□□□□□ -0.41
DEP1	YAL013W	PHO4	P07270	312 aa	Known RBP	12.48	□□□□□ -0.41
DEP1	YAL013W	RPS18A	P0CX55	146 aa	Known RBP	12.48	□□□□□ -0.41
DEP1	YAL013W	RPS18B	P0CX56	146 aa	Predicted RBP	12.48	□□□□□ -0.41
DEP1	YAL013W	STE18	P18852	110 aa		12.48	□□□□□ -0.41
DEP1	YAL013W	ERG24	P32462	438 aa	Known RBP	12.48	□□□□□ -0.41
DEP1	YAL013W	RIB7	P33312	244 aa		12.48	□□□□□ -0.41
DEP1	YAL013W	SEC66	P33754	206 aa		12.48	□□□□□ -0.41
DEP1	YAL013W	RTT105	P40063	208 aa		12.48	□□□□□ -0.41
DEP1	YAL013W	BSC5	P53755	489 aa		12.48	□□□□□ -0.41
DEP1	YAL013W	PET191	Q02772	108 aa		12.48	□□□□□ -0.41
DEP1	YAL013W	YRM1	Q12340	786 aa		12.48	□□□□□ -0.41
DEP1	YAL013W	SEC16	P48415	2195 aa	Known RBP	12.47	□□□□□ -0.41
DEP1	YAL013W	SOD2	P00447	233 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	CAP2	P13517	287 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	KAE1	P36132	386 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	MOH1	P38191	138 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	APD1	P38281	316 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	MSS4	P38994	779 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	YJR120W	P47157	116 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	TPN1	P53099	579 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	YGR066C	P53242	292 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	PCP1	P53259	346 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	CTS2	Q06350	511 aa		12.47	□□□□□ -0.41
DEP1	YAL013W	SYC1	Q08553	188 aa	Predicted RBP	12.47	□□□□□ -0.41
DEP1	YAL013W	DBF2	P22204	572 aa		12.46	□□□□□ -0.41
DEP1	YAL013W	YIL169C	P40442	995 aa		12.46	□□□□□ -0.41
DEP1	YAL013W	MNN5	P46982	586 aa		12.46	□□□□□ -0.41
DEP1	YAL013W	ASI3	P53983	676 aa		12.46	□□□□□ -0.41
DEP1	YAL013W	NNT1	Q05874	261 aa		12.46	□□□□□ -0.41
DEP1	YAL013W	YOR283W	Q12040	230 aa	Known RBP	12.46	□□□□□ -0.41
DEP1	YAL013W	CYC1	P00044	109 aa	Predicted RBP	12.45	□□□□□ -0.42
DEP1	YAL013W	SCEI	P03882	235 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	MSW1	P04803	379 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	ADK1	P07170	222 aa	Known RBP	12.45	□□□□□ -0.42
DEP1	YAL013W	MEK1	P24719	497 aa	Predicted RBP	12.45	□□□□□ -0.42
DEP1	YAL013W	ERG4	P25340	473 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	ADH7	P25377	361 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	RPC34	P32910	317 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	SPT10	P35208	640 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	MGE1	P38523	228 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	AIM20	P40451	204 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	SOK2	P53438	785 aa	Predicted RBP	12.45	□□□□□ -0.42
DEP1	YAL013W	YDR102C	Q03864	110 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	Q0144	Q9ZZW2	109 aa		12.45	□□□□□ -0.42
DEP1	YAL013W	SOF1	P33750	489 aa	Known RBP	12.44	□□□□□ -0.42
DEP1	YAL013W	LYS5	P50113	272 aa		12.44	□□□□□ -0.42

Retrieved 100 of 5,963 RNA–protein pairs in 60 ms