RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FLT1P17948 1338 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 PI4K2BG5E9Z4 385 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 PFDN1O60925 122 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 ATP5HO75947 161 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 HAUS5O94927 633 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 SERPINB4P48594 390 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 MFAP3P55082 362 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 NCALDP61601 193 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 YWHAGP61981 247 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLN3-244ENST00000636147 TRMT10CQ7L0Y3 403 aaKnown RBP11.78□□□□□ -0.52
CLN3-244ENST00000636147 ELMO3Q96BJ8 720 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 RBM15Q96T37 977 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLN3-244ENST00000636147 IKZF4Q9H2S9 585 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 ERVK-5Q9HDB9 667 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 RAB20Q9NX57 234 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 ARHGAP23Q9P227 1491 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 ATXN2Q99700 1313 aaKnown RBP11.78□□□□□ -0.52
CLN3-244ENST00000636147 FAM47DPA6NHR8 397 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 GDF11O95390 407 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 CBX6O95503 412 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 ZCCHC18P0CG32 403 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 CREB1P16220 341 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 SERPINB6P35237 376 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 CNGA2Q16280 664 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 CEP128Q6ZU80 1094 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 C3orf67Q6ZVT6 689 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 SLC13A5Q86YT5 568 aaPredicted RBP11.78□□□□□ -0.52
CLN3-244ENST00000636147 ANKMY2Q8IV38 441 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 ZBED8Q8IZ13 594 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 PGM2Q96G03 612 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLN3-244ENST00000636147 PPARGC1AQ9UBK2 798 aaKnown RBP11.78□□□□□ -0.52
CLN3-244ENST00000636147 AKAP12Q02952 1782 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 KCNA3P22001 575 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 PSEN1P49768 467 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 DOK7Q18PE1 504 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 IRF2BP2Q7Z5L9 587 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.78□□□□□ -0.52
CLN3-244ENST00000636147 PWWP2AQ96N64 755 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 RUSC1Q9BVN2 902 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 IMPG2Q9BZV3 1241 aa11.78□□□□□ -0.52
CLN3-244ENST00000636147 MGRN1O60291 552 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 SORBS3O60504 671 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 NTSR2O95665 410 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 KITP10721 976 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 EPHB2P29323 1055 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 ICA1Q05084 483 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 AUHQ13825 339 aaKnown RBP11.77□□□□□ -0.52
CLN3-244ENST00000636147 C6orf89Q6UWU4 347 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 MIER3Q7Z3K6 550 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 FBXO33Q7Z6M2 555 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 AGGF1Q8N302 714 aaeCLIP11.77□□□□□ -0.52
CLN3-244ENST00000636147 BBOF1Q8ND07 529 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 CCDC110Q8TBZ0 833 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 RSAD2Q8WXG1 361 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 TRIM55Q9BYV6 548 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 WNT8AQ9H1J5 351 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 GINM1Q9NU53 330 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 TMOD2Q9NZR1 351 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.77□□□□□ -0.52
CLN3-244ENST00000636147 AGAP1Q9UPQ3 857 aa11.77□□□□□ -0.52
CLN3-244ENST00000636147 UBAP1LF5GYI3 381 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 hCG_1984214I3L0E3 225 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 KIAA0391O15091 583 aaKnown RBP11.77□□□□□ -0.53
CLN3-244ENST00000636147 PPFIA2O75334 1257 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 LCA5LO95447 670 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 GH1P01241 217 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 MT-ND3P03897 115 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 PYGMP11217 842 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 MYCLP12524 364 aaPredicted RBP11.77□□□□□ -0.53
CLN3-244ENST00000636147 RCN1Q15293 331 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 ECM1Q16610 540 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 SDCCAG8Q86SQ7 713 aaPredicted RBP11.77□□□□□ -0.53
CLN3-244ENST00000636147 EXOC3L1Q86VI1 746 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 ZNF713Q8N859 430 aaPredicted RBP11.77□□□□□ -0.53
CLN3-244ENST00000636147 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLN3-244ENST00000636147 RAB3IL1Q8TBN0 382 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 ALG3Q92685 438 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 ZSWIM1Q9BR11 485 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 GANQ9H2C0 597 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 RXFP1Q9HBX9 757 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 PPIP5K2O43314 1243 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 CD58P19256 250 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 MRPS35P82673 323 aaKnown RBP11.77□□□□□ -0.53
CLN3-244ENST00000636147 GPS1Q13098 491 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 COG2Q14746 738 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 CERKLQ49MI3 558 aaPredicted RBP11.77□□□□□ -0.53
CLN3-244ENST00000636147 SYCP2LQ5T4T6 812 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 PYROXD1Q8WU10 500 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 ABTB1Q969K4 478 aaPredicted RBP11.77□□□□□ -0.53
CLN3-244ENST00000636147 DNAJC19Q96DA6 116 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 EIF2AK1Q9BQI3 630 aaKnown RBP11.77□□□□□ -0.53
CLN3-244ENST00000636147 C11orf70Q9BRQ4 267 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 SMYD3Q9H7B4 428 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 JMJD4Q9H9V9 463 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 ACP6Q9NPH0 428 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 C1orf112Q9NSG2 853 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 PHTF1Q9UMS5 762 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 MYO3BQ8WXR4 1341 aa11.77□□□□□ -0.53
CLN3-244ENST00000636147 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms