RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 INPPL1O15357 1258 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 MARCH6O60337 910 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 ZMYND10O75800 440 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 PSMD10O75832 226 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 CNPP09543 421 aaKnown RBP7.03□□□□□ -1.28
CUX1-220ENST00000607092 ITGA4P13612 1032 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 CDC27P30260 824 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 QARSP47897 775 aaKnown RBP7.03□□□□□ -1.28
CUX1-220ENST00000607092 SLC11A1P49279 550 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 AK2P54819 239 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 PFKPQ01813 784 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 POU5F1BQ06416 359 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 CAMK2BQ13554 666 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 TFDP1Q14186 410 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 PUM1Q14671 1186 aaKnown RBP eCLIP7.03□□□□□ -1.281e-6■■■■■ 27.1
CUX1-220ENST00000607092 USP41Q3LFD5 358 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 CWF19L1Q69YN2 538 aaKnown RBP7.03□□□□□ -1.28
CUX1-220ENST00000607092 NOTUMQ6P988 496 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 RTL10Q7L3V2 364 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 KRT25Q7Z3Z0 450 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 C12orf76Q8N812 135 aaPredicted RBP7.03□□□□□ -1.28
CUX1-220ENST00000607092 RUBCNQ92622 972 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 BRF1Q92994 677 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 LENG9Q96B70 501 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 FAM20AQ96MK3 541 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 NLRP4Q96MN2 994 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 HERC2P3Q9BVR0 1158 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 TRIM6Q9C030 488 aaPredicted RBP7.03□□□□□ -1.28
CUX1-220ENST00000607092 UNC45AQ9H3U1 944 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 RXFP1Q9HBX9 757 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 MAN1C1Q9NR34 630 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 FAM217BQ9NTX9 383 aaPredicted RBP7.03□□□□□ -1.28
CUX1-220ENST00000607092 PCDHA4Q9UN74 947 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 SIT1Q9Y3P8 196 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 FRYLO94915 3013 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 CCDC195A0A1B0GUA6 201 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 NRP1O14786 923 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 TBX3O15119 743 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 SPTLC1O15269 473 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 NCAM2O15394 837 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 EPB41L2O43491 1005 aaKnown RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 LILRB3O75022 631 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 XYLBO75191 536 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 CDC45O75419 566 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 CDKL5O76039 1030 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 REC8O95072 547 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 DEXIO95424 95 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 PAPLNO95428 1278 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 BAG4O95429 457 aaKnown RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 P4HBP07237 508 aaKnown RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 HNRNPA1P09651 372 aaKnown RBP eCLIP7.02□□□□□ -1.29
CUX1-220ENST00000607092 WEE2P0C1S8 567 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 NCLP19338 710 aaKnown RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 FGFR4P22455 802 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 OR1G1P47890 313 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 ELAVL2Q12926 359 aaKnown RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 ZNF528Q3MIS6 628 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 LIN9Q5TKA1 542 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 PPP4R3AQ6IN85 833 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 RSPO2Q6UXX9 243 aaPredicted RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 MTSS1LQ765P7 747 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 DGLUCYQ7Z3D6 616 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 SLFN12Q8IYM2 578 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 DAGLBQ8NCG7 672 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 TBCKQ8TEA7 893 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 AUTS2Q8WXX7 1259 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 SMG7Q92540 1137 aaKnown RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 CCDC43Q96MW1 224 aaKnown RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 NELL2Q99435 816 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 HINFPQ9BQA5 517 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 SLC26A6Q9BXS9 759 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 OSBPL6Q9BZF3 934 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 SLKQ9H2G2 1235 aaPredicted RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 ARHGEF3Q9NR81 526 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 SLC2A4RGQ9NR83 387 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 FNIP2Q9P278 1114 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 DNAJB4Q9UDY4 337 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 DDX25Q9UHL0 483 aaKnown RBP7.02□□□□□ -1.29
CUX1-220ENST00000607092 GIT1Q9Y2X7 761 aa7.02□□□□□ -1.29
CUX1-220ENST00000607092 SF3B1O75533 1304 aaKnown RBP eCLIP7.01□□□□□ -1.299e-7■■■■■ 43.6
CUX1-220ENST00000607092 PLXNA3P51805 1871 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 TEX28O15482 410 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 KINO60870 393 aaKnown RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 SSBP05455 408 aaKnown RBP eCLIP7.01□□□□□ -1.29
CUX1-220ENST00000607092 CFHP08603 1231 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 LAMP2P13473 410 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 NPR3P17342 541 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 HOXA9P31269 272 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 EVCP57679 992 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 DSG1Q02413 1049 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 PRKCQQ04759 706 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 SSRP1Q08945 709 aaKnown RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 LAMTOR4Q0VGL1 99 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 PPP2R5CQ13362 524 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 UGCGQ16739 394 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 DCLRE1AQ6PJP8 1040 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 B3GNT9Q6UX72 402 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 AGMOQ6ZNB7 445 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 Q6ZUG5 572 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 ANO5Q75V66 913 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms