RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 DENND3A2RUS2 1198 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 PHF20L1A8MW92 1017 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 ZBED4O75132 1171 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 ADRB2P07550 413 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 MARCKSL1P49006 195 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 IRAK1P51617 712 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 HMGCS2P54868 508 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SWSAP1Q6NVH7 229 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 B3GNT9Q6UX72 402 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 INTS8Q75QN2 995 aaKnown RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 CYFIP1Q7L576 1253 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 FAM83AQ86UY5 434 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SLC47A2Q86VL8 602 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SYCE1Q8N0S2 351 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SLC30A5Q8TAD4 765 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 RFFLQ8WZ73 363 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 DEFB129Q9H1M3 183 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 TAF1DQ9H5J8 278 aaPredicted RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 TMEM206Q9H813 350 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 RNF146Q9NTX7 359 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 RRP15Q9Y3B9 282 aaKnown RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 COL4A5P29400 1685 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 GOLGA8KD6RF30 607 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 WDR46O15213 610 aaKnown RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 CCDC172P0C7W6 258 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 IRX5P78411 483 aaPredicted RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 GUCY1A3Q02108 690 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 PPP2R5AQ15172 486 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SNRNP48Q6IEG0 339 aaKnown RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 NLRX1Q86UT6 975 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 MICALL2Q8IY33 904 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 AGBL3Q8NEM8 1001 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 UHMK1Q8TAS1 419 aaKnown RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 POMGNT1Q8WZA1 660 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 PDCD2LQ9BRP1 358 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 TMEM117Q9H0C3 514 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SLC38A10Q9HBR0 1119 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 HACL1Q9UJ83 578 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 UBIAD1Q9Y5Z9 338 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SMIM23A6NLE4 172 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 TBC1D12O60347 775 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 COQ9O75208 318 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 IVLP07476 585 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 KRT5P13647 590 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 CTNNA1P35221 906 aaKnown RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SF3A3Q12874 501 aaKnown RBP eCLIP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 ODF2Q5BJF6 829 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 ALS2CLQ60I27 953 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 PCNX4Q63HM2 1172 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 LMO3Q8TAP4 145 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 SCFD2Q8WU76 684 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 KRT35Q92764 455 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 CAVIN3Q969G5 261 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 RNPC3Q96LT9 517 aaKnown RBP9.45□□□□□ -0.9
LINC00558-201ENST00000569422 ERVK-5Q9HDB9 667 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 KMT5AQ9NQR1 393 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 KCND2Q9NZV8 630 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 FBXL5Q9UKA1 691 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 ALG6Q9Y672 507 aa9.45□□□□□ -0.9
LINC00558-201ENST00000569422 MYO1CO00159 1063 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 PPP1R37O75864 691 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 MMEP08473 750 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 TMEM253P0C7T8 217 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 BDNFP23560 247 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 CNGA1P29973 690 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 NPTX2P47972 431 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 SNRNP35Q16560 246 aaKnown RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 DCAF12L1Q5VU92 463 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 DLK2Q6UY11 383 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 ANO5Q75V66 913 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 ACTRT1Q8TDG2 376 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 ALG3Q92685 438 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 SEMA4DQ92854 862 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 WRNIP1Q96S55 665 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 TAOK3Q9H2K8 898 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 PXMP2Q9NR77 195 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 PIM2Q9P1W9 311 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 SUCLA2Q9P2R7 463 aaPredicted RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 SEPT9Q9UHD8 586 aaPredicted RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 SYNPO2Q9UMS6 1093 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 ATP8A1Q9Y2Q0 1164 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 PTPN22Q9Y2R2 807 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 HNRNPDLO14979 420 aaKnown RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 HARSP12081 509 aaKnown RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 ADSSP30520 456 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 SMTNP53814 917 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 PSMC5P62195 406 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 DMP1Q13316 513 aaPredicted RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 SF3B2Q13435 895 aaKnown RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 C1orf220Q5T0J3 134 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 OLIG1Q8TAK6 271 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 ZC3H15Q8WU90 426 aaKnown RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 BSNDQ8WZ55 320 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 PCDHB18PQ96TA0 734 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 TBC1D22BQ9NU19 505 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 WDR70Q9NW82 654 aa9.44□□□□□ -0.9
LINC00558-201ENST00000569422 UTP11Q9Y3A2 253 aaKnown RBP9.44□□□□□ -0.9
LINC00558-201ENST00000569422 GOLGA6L10A6NI86 522 aa9.43□□□□□ -0.9
LINC00558-201ENST00000569422 BTNL10A8MVZ5 291 aa9.43□□□□□ -0.9
LINC00558-201ENST00000569422 WDR64B1ANS9 1081 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms