RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 LMO3Q8TAP4 145 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 DDX23Q9BUQ8 820 aaKnown RBP14.22□□□□□ -0.13
CLN3-210ENST00000563874 ABCF3Q9NUQ8 709 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 MTRF1LQ9UGC7 380 aaKnown RBP14.22□□□□□ -0.13
CLN3-210ENST00000563874 MCM8Q9UJA3 840 aa14.22□□□□□ -0.13
CLN3-210ENST00000563874 FOCADQ5VW36 1801 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 RASGRF2O14827 1237 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 HGSO14964 777 aaPredicted RBP14.21□□□□□ -0.13
CLN3-210ENST00000563874 RIPK2O43353 540 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 GAS7O60861 476 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 SGPL1O95470 568 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 ACSL3O95573 720 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 PPP3CAQ08209 521 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 NSMFQ6X4W1 530 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 PCDHB18PQ96TA0 734 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 DMAC2Q9NW81 257 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 BTAF1O14981 1849 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 AUHQ13825 339 aaKnown RBP14.21□□□□□ -0.13
CLN3-210ENST00000563874 SPDYCQ5MJ68 293 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 C6orf118Q5T5N4 469 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 SEL1L2Q5TEA6 688 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 PIGWQ7Z7B1 504 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 PCDHA3Q9Y5H8 950 aa14.21□□□□□ -0.13
CLN3-210ENST00000563874 SPOPO43791 374 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 PSMD10O75832 226 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 DNAJC8O75937 253 aaPredicted RBP14.21□□□□□ -0.14
CLN3-210ENST00000563874 GH2P01242 217 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 RPSAP08865 295 aaKnown RBP14.21□□□□□ -0.14
CLN3-210ENST00000563874 BCRP11274 1271 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 BMP3P12645 472 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 GPC5P78333 572 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 ADCY2Q08462 1091 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 SNX1Q13596 522 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 SLC15A2Q16348 729 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 ABCB5Q2M3G0 1257 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 CCDC174Q6PII3 467 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 DYDC1Q8WWB3 177 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 PI4KBQ9UBF8 816 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 FAM198AQ9UFP1 575 aa14.21□□□□□ -0.14
CLN3-210ENST00000563874 K7ENM7 598 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 HIP1RO75146 1068 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 AGTP01019 485 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 RARAP10276 462 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 HOXA10P31260 410 aaPredicted RBP14.2□□□□□ -0.14
CLN3-210ENST00000563874 PEX5P50542 639 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 DRG2P55039 364 aaKnown RBP14.2□□□□□ -0.14
CLN3-210ENST00000563874 PPP2R5AQ15172 486 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 WLSQ5T9L3 541 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 HHIPL2Q6UWX4 724 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 KIRREL3Q8IZU9 778 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 CCDC63Q8NA47 563 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 CBWD1Q9BRT8 395 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 PCYOX1Q9UHG3 505 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 PRR12Q9ULL5 1215 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 AGAP1Q9UPQ3 857 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 SUGT1Q9Y2Z0 365 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 A0A1W2PRG0 241 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 MIF4GDA9UHW6 222 aaKnown RBP14.2□□□□□ -0.14
CLN3-210ENST00000563874 ASAP2O43150 1006 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 MGRN1O60291 552 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 ECM2O94769 699 aaPredicted RBP14.2□□□□□ -0.14
CLN3-210ENST00000563874 DLATP10515 647 aaKnown RBP14.2□□□□□ -0.14
CLN3-210ENST00000563874 GHRP10912 638 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 CTNNA2P26232 953 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 ADCY1Q08828 1119 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 TRPM8Q7Z2W7 1104 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 C1orf54Q8WWF1 131 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 NOD2Q9HC29 1040 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 TUFT1Q9NNX1 390 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 CTNNAL1Q9UBT7 734 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 STK24Q9Y6E0 443 aa14.2□□□□□ -0.14
CLN3-210ENST00000563874 PODXLO00592 558 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 ATP6V1G2O95670 118 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 ARP10275 920 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 ELF1P32519 619 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 COILP38432 576 aaPredicted RBP14.19□□□□□ -0.14
CLN3-210ENST00000563874 TRIP13Q15645 432 aaPredicted RBP14.19□□□□□ -0.14
CLN3-210ENST00000563874 CNGA2Q16280 664 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 C11orf63Q6NUN7 778 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 NOP9Q86U38 636 aaKnown RBP14.19□□□□□ -0.14
CLN3-210ENST00000563874 SP8Q8IXZ3 490 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 DAW1Q8N136 415 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 P3H4Q92791 437 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 CRAMP1Q96RY5 1269 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 LXNQ9BS40 222 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 CYP26A1O43174 497 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 EZRP15311 586 aaKnown RBP14.19□□□□□ -0.14
CLN3-210ENST00000563874 PRELPP51888 382 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 ACCSLQ4AC99 568 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 EXOC3L1Q86VI1 746 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 SLC47A2Q86VL8 602 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 COL23A1Q86Y22 540 aaPredicted RBP14.19□□□□□ -0.14
CLN3-210ENST00000563874 ANKRD42Q8N9B4 389 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 UNC45AQ9H3U1 944 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 FGFR1OP2Q9NVK5 253 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 SLC12A4Q9UP95 1085 aa14.19□□□□□ -0.14
CLN3-210ENST00000563874 ARHGEF35A5YM69 484 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 GOLGA8IPA6NC78 632 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 GOLGA8JA6NMD2 632 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 CLDN3O15551 220 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms