RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 KCNK12Q9HB15 430 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 KCNJ14Q9UNX9 436 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 SSX2IPQ9Y2D8 614 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 MYO15AQ9UKN7 3530 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 PTPRZ1P23471 2315 aaPredicted RBP18.35■□□□□ 0.53
CLN3-208ENST00000561505 ZMYM2Q9UBW7 1377 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 SLITRK3O94933 977 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 SRGAP2CP0DJJ0 459 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 CA8P35219 290 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 DSG1Q02413 1049 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 AMHR2Q16671 573 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 TAS1R1Q7RTX1 841 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 HSD17B14Q9BPX1 270 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 LXNQ9BS40 222 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 NFKBIZQ9BYH8 718 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 ZSWIM4Q9H7M6 989 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 WDR6Q9NNW5 1121 aaKnown RBP18.34■□□□□ 0.53
CLN3-208ENST00000561505 RGL1Q9NZL6 768 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 IPPQ9Y573 584 aa18.34■□□□□ 0.53
CLN3-208ENST00000561505 C2orf16Q68DN1 1984 aa18.33■□□□□ 0.53
CLN3-208ENST00000561505 SPTBN4Q9H254 2564 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 CCDC194A0A1B0GVG4 234 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 ZBTB39O15060 712 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 TSPAN1O60635 241 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 MXD4Q14582 209 aaPredicted RBP18.33■□□□□ 0.52
CLN3-208ENST00000561505 EMC2Q15006 297 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 LILRA6Q6PI73 481 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 RNF149Q8NC42 400 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 GSTCDQ8NEC7 633 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 RNF39Q9H2S5 420 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 MIOSQ9NXC5 875 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 EPS15L1Q9UBC2 864 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 DPP7Q9UHL4 492 aa18.33■□□□□ 0.52
CLN3-208ENST00000561505 FAM186AA6NE01 2351 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 ARL5CA6NH57 179 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 TEX28O15482 410 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 PI15O43692 258 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 POMCP01189 267 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 ADH1AP07327 375 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 ITGA4P13612 1032 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 SCRN1Q12765 414 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 EARS2Q5JPH6 523 aaKnown RBP18.32■□□□□ 0.52
CLN3-208ENST00000561505 CCDC105Q8IYK2 499 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 OXER1Q8TDS5 423 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 TNFRSF25Q93038 417 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 NXPE3Q969Y0 559 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 ZNF707Q96C28 371 aaPredicted RBP18.32■□□□□ 0.52
CLN3-208ENST00000561505 DYDC2Q96IM9 177 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 FAM193BQ96PV7 902 aaPredicted RBP18.32■□□□□ 0.52
CLN3-208ENST00000561505 RTP3Q9BQQ7 232 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 LARP6Q9BRS8 491 aaKnown RBP18.32■□□□□ 0.52
CLN3-208ENST00000561505 EIF2AQ9BY44 585 aaKnown RBP18.32■□□□□ 0.52
CLN3-208ENST00000561505 CSRNP2Q9H175 543 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 ANKEF1Q9NU02 776 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 WNT16Q9UBV4 365 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 GIT1Q9Y2X7 761 aa18.32■□□□□ 0.52
CLN3-208ENST00000561505 VPS13AQ96RL7 3174 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 CCNT1O60563 726 aaKnown RBP18.31■□□□□ 0.52
CLN3-208ENST00000561505 PFKFB2O60825 505 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 CDKL5O76039 1030 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 URODP06132 367 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 ARL2P36404 184 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 XKR9Q5GH70 373 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 NOTUMQ6P988 496 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 POTEDQ86YR6 584 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 SLFN12Q8IYM2 578 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 GAD1Q99259 594 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 PLEKHA4Q9H4M7 779 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 MAN1C1Q9NR34 630 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 GJB4Q9NTQ9 266 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 FNIP2Q9P278 1114 aa18.31■□□□□ 0.52
CLN3-208ENST00000561505 DMDP11532 3685 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 GVINP1Q7Z2Y8 2422 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 CCDC195A0A1B0GUA6 201 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 CTDNEP1O95476 244 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 GLUD2P49448 558 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 FOXK2Q01167 660 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 MBTD1Q05BQ5 628 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 STK3Q13188 491 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 MTRQ99707 1265 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 SLKQ9H2G2 1235 aaPredicted RBP18.3■□□□□ 0.52
CLN3-208ENST00000561505 MFSD1Q9H3U5 465 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 PDRG1Q9NUG6 133 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 ARID2Q68CP9 1835 aa18.3■□□□□ 0.52
CLN3-208ENST00000561505 ZNF292O60281 2723 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 A0A1B0GUA9 196 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 DGAT1O75907 488 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 ERLIN2O94905 339 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 SSBP05455 408 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-208ENST00000561505 XRCC6P12956 609 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-208ENST00000561505 XBP1P17861 261 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 ARF4P18085 180 aaPredicted RBP18.29■□□□□ 0.52
CLN3-208ENST00000561505 MLH1P40692 756 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 CAPSQ13938 189 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 CTTNQ14247 550 aaKnown RBP18.29■□□□□ 0.52
CLN3-208ENST00000561505 PIK3AP1Q6ZUJ8 805 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 SLC44A3Q8N4M1 653 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 ZFP42Q96MM3 310 aa18.29■□□□□ 0.52
CLN3-208ENST00000561505 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-208ENST00000561505 ZDHHC7Q9NXF8 308 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms