RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TCHPQ9BT92 498 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 OSBPL7Q9BZF2 842 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 CLSTN2Q9H4D0 955 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 ELAC1Q9H777 363 aaKnown RBP11.05□□□□□ -0.64
USP3-216ENST00000559873 FAM105AQ9NUU6 356 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 TMEM161AQ9NX61 479 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 PCDH10Q9P2E7 1040 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 PCDHB7Q9Y5E2 793 aa11.05□□□□□ -0.64
USP3-216ENST00000559873 TRIOBPQ9H2D6 2365 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.04□□□□□ -0.64
USP3-216ENST00000559873 C9IYK1 514 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 CLDN3O15551 220 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 KLRC4O43908 158 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 EOMESO95936 686 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 MYBP10242 640 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 IBSPP21815 317 aaPredicted RBP11.04□□□□□ -0.64
USP3-216ENST00000559873 HOXA11P31270 313 aaPredicted RBP11.04□□□□□ -0.64
USP3-216ENST00000559873 PPP1R2P41236 205 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 SNRPFP62306 86 aaKnown RBP11.04□□□□□ -0.64
USP3-216ENST00000559873 EHHADHQ08426 723 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 STIM1Q13586 685 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 NOLC1Q14978 699 aaKnown RBP eCLIP11.04□□□□□ -0.64
USP3-216ENST00000559873 RAB30Q15771 203 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 KYAT1Q16773 422 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 SLFN12LQ6IEE8 588 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 MPZL3Q6UWV2 235 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 ABI1Q8IZP0 508 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 RNF169Q8NCN4 708 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 GOLGA5Q8TBA6 731 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 LINC01599Q8WXQ3 324 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 CPB2Q96IY4 423 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 ZBED2Q9BTP6 218 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 TARS2Q9BW92 718 aaKnown RBP11.04□□□□□ -0.64
USP3-216ENST00000559873 PDZD7Q9H5P4 517 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 UBN1Q9NPG3 1134 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 CXXC1Q9P0U4 656 aaPredicted RBP11.04□□□□□ -0.64
USP3-216ENST00000559873 ANKFY1Q9P2R3 1169 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 PCDHB2Q9Y5E7 798 aa11.04□□□□□ -0.64
USP3-216ENST00000559873 ZMYM2Q9UBW7 1377 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 KIAA0391O15091 583 aaKnown RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 MGEA5O60502 916 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 ZNF623O75123 536 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 GJB5O95377 273 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 NPTXRO95502 500 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 MCF2P10911 925 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 YARSP54577 528 aaKnown RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 DEFB103AP81534 67 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 BMT2Q1RMZ1 405 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 TCTN1Q2MV58 587 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 ZC2HC1CQ53FD0 456 aaPredicted RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 GLB1LQ6UWU2 654 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP3-216ENST00000559873 TAS1R3Q7RTX0 852 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 ECHDC2Q86YB7 292 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 HERC6Q8IVU3 1022 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 TRIML1Q8N9V2 468 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 TOP1MTQ969P6 601 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 YME1L1Q96TA2 773 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 ACO2Q99798 780 aaKnown RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 CCDC94Q9BW85 323 aaPredicted RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 MRPL9Q9BYD2 267 aaKnown RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 GBP3Q9H0R5 595 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 PRO3102Q9H379 93 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 SLC39A2Q9NP94 309 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 TOPORSQ9NS56 1045 aaPredicted RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 CGNQ9P2M7 1197 aaKnown RBP11.03□□□□□ -0.64
USP3-216ENST00000559873 IPPQ9Y573 584 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 PCDHA5Q9Y5H7 936 aa11.03□□□□□ -0.64
USP3-216ENST00000559873 TLL1O43897 1013 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 PRPF6O94906 941 aaKnown RBP11.02□□□□□ -0.65
USP3-216ENST00000559873 HARSP12081 509 aaKnown RBP11.02□□□□□ -0.65
USP3-216ENST00000559873 ITGA4P13612 1032 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 CASP5P51878 434 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 FAM189BP81408 668 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 STK4Q13043 487 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 CAMK4Q16566 473 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 SKOR2Q2VWA4 1001 aaPredicted RBP11.02□□□□□ -0.65
USP3-216ENST00000559873 UBXN11Q5T124 520 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 CCDC183Q5T5S1 534 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 NT5DC1Q5TFE4 455 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 ZNF658Q5TYW1 1059 aaPredicted RBP11.02□□□□□ -0.65
USP3-216ENST00000559873 EPM2AIP1Q7L775 607 aaPredicted RBP11.02□□□□□ -0.65
USP3-216ENST00000559873 SPATA20Q8TB22 786 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 ZNF507Q8TCN5 953 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 URGCPQ8TCY9 931 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 GPT2Q8TD30 523 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 SCFD1Q8WVM8 642 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 POMGNT1Q8WZA1 660 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 HPS3Q969F9 1004 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 RPS6KC1Q96S38 1066 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 MSTO1Q9BUK6 570 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 STRA6Q9BX79 667 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 CDT1Q9H211 546 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 RSAD1Q9HA92 442 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 KIAA1468Q9P260 1216 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 MSRAQ9UJ68 235 aa11.02□□□□□ -0.65
USP3-216ENST00000559873 COLQQ9Y215 455 aaPredicted RBP11.02□□□□□ -0.65
USP3-216ENST00000559873 INSL6Q9Y581 213 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms