RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 VCAM1P19320 739 aa9□□□□□ -0.97
SPG11-209ENST00000558253 ERCC3P19447 782 aa9□□□□□ -0.97
SPG11-209ENST00000558253 GARTP22102 1010 aa9□□□□□ -0.97
SPG11-209ENST00000558253 ACTN2P35609 894 aa9□□□□□ -0.97
SPG11-209ENST00000558253 GALCP54803 685 aa9□□□□□ -0.97
SPG11-209ENST00000558253 KCNA1Q09470 495 aa9□□□□□ -0.97
SPG11-209ENST00000558253 DMP1Q13316 513 aaPredicted RBP9□□□□□ -0.97
SPG11-209ENST00000558253 ITGB3BPQ13352 177 aaPredicted RBP9□□□□□ -0.97
SPG11-209ENST00000558253 COG2Q14746 738 aa9□□□□□ -0.97
SPG11-209ENST00000558253 GNPTABQ3T906 1256 aa9□□□□□ -0.97
SPG11-209ENST00000558253 EPC2Q52LR7 807 aa9□□□□□ -0.97
SPG11-209ENST00000558253 BRDTQ58F21 947 aaPredicted RBP9□□□□□ -0.97
SPG11-209ENST00000558253 NOL9Q5SY16 702 aaKnown RBP9□□□□□ -0.97
SPG11-209ENST00000558253 CFAP58Q5T655 872 aa9□□□□□ -0.97
SPG11-209ENST00000558253 C11orf63Q6NUN7 778 aa9□□□□□ -0.97
SPG11-209ENST00000558253 DAW1Q8N136 415 aa9□□□□□ -0.97
SPG11-209ENST00000558253 AFAP1L1Q8TED9 768 aa9□□□□□ -0.97
SPG11-209ENST00000558253 U2AF1L4Q8WU68 220 aaKnown RBP9□□□□□ -0.97
SPG11-209ENST00000558253 LRRC45Q96CN5 670 aa9□□□□□ -0.97
SPG11-209ENST00000558253 HES6Q96HZ4 224 aa9□□□□□ -0.97
SPG11-209ENST00000558253 RPS6KC1Q96S38 1066 aa9□□□□□ -0.97
SPG11-209ENST00000558253 AGPAT1Q99943 283 aa9□□□□□ -0.97
SPG11-209ENST00000558253 SH3GL2Q99962 352 aa9□□□□□ -0.97
SPG11-209ENST00000558253 FAM129AQ9BZQ8 928 aa9□□□□□ -0.97
SPG11-209ENST00000558253 CARD9Q9H257 536 aa9□□□□□ -0.97
SPG11-209ENST00000558253 RPAP3Q9H6T3 665 aaPredicted RBP9□□□□□ -0.97
SPG11-209ENST00000558253 RAVER2Q9HCJ3 691 aaKnown RBP9□□□□□ -0.97
SPG11-209ENST00000558253 RBM12Q9NTZ6 932 aaKnown RBP9□□□□□ -0.97
SPG11-209ENST00000558253 HSPBP1Q9NZL4 362 aa9□□□□□ -0.97
SPG11-209ENST00000558253 COL20A1Q9P218 1284 aa9□□□□□ -0.97
SPG11-209ENST00000558253 WRAP73Q9P2S5 460 aaPredicted RBP9□□□□□ -0.97
SPG11-209ENST00000558253 COQ4Q9Y3A0 265 aa9□□□□□ -0.97
SPG11-209ENST00000558253 CD2APQ9Y5K6 639 aa9□□□□□ -0.97
SPG11-209ENST00000558253 FZD9O00144 591 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 NCK2O43639 380 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 RNF40O75150 1001 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 RTN2O75298 545 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 DGAT1O75907 488 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 FTCDO95954 541 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 TFRCP02786 760 aaKnown RBP8.99□□□□□ -0.97
SPG11-209ENST00000558253 CXCR5P32302 372 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 BPIFB4P59827 614 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 UBXN2AP68543 259 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 MTMR3Q13615 1198 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 SUPT20HL1Q3ZLR7 823 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 CBWD6Q4V339 395 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 XKR9Q5GH70 373 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 CBWD3Q5JTY5 395 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 CBWD5Q5RIA9 395 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 EMC10Q5UCC4 262 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 KRT39Q6A163 491 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 LRIG3Q6UXM1 1119 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 SND1Q7KZF4 910 aaKnown RBP eCLIP8.99□□□□□ -0.97
SPG11-209ENST00000558253 CROCCP2Q86T23 111 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 DAAM2Q86T65 1068 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 NT5DC3Q86UY8 548 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 MAP4K3Q8IVH8 894 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 EXOC8Q8IYI6 725 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 CPXCR1Q8N123 301 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 UBL4BQ8N7F7 174 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 CHST13Q8NET6 341 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 DNERQ8NFT8 737 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 LMO3Q8TAP4 145 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 FAM76AQ8TAV0 307 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 IFT74Q96LB3 600 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 MFSD14AQ96MC6 490 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 FBXL18Q96ME1 805 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 TAAR1Q96RJ0 339 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 PLVAPQ9BX97 442 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 GLIS2Q9BZE0 524 aaPredicted RBP8.99□□□□□ -0.97
SPG11-209ENST00000558253 FAM107BQ9H098 131 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 RAB17Q9H0T7 212 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 ISCUQ9H1K1 167 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 TAF1DQ9H5J8 278 aaPredicted RBP8.99□□□□□ -0.97
SPG11-209ENST00000558253 EFCC1Q9HA90 598 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 TMEM8AQ9HCN3 771 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 ZCCHC17Q9NP64 241 aaKnown RBP8.99□□□□□ -0.97
SPG11-209ENST00000558253 ST7Q9NRC1 585 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 FAM114A2Q9NRY5 505 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 RNF146Q9NTX7 359 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.99□□□□□ -0.97
SPG11-209ENST00000558253 TMOD4Q9NZQ9 345 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 DMGDHQ9UI17 866 aaKnown RBP8.99□□□□□ -0.97
SPG11-209ENST00000558253 TBX20Q9UMR3 447 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 FAN1Q9Y2M0 1017 aa8.99□□□□□ -0.97
SPG11-209ENST00000558253 ASTN2O75129 1339 aaPredicted RBP8.99□□□□□ -0.97
SPG11-209ENST00000558253 FAM187AA6NFU0 413 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 TMCO5BA8MYB1 307 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 TULP2O00295 520 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 ZBTB39O15060 712 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 CEP104O60308 925 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 HEXIM1O94992 359 aaKnown RBP8.98□□□□□ -0.97
SPG11-209ENST00000558253 SYF2O95926 243 aaKnown RBP8.98□□□□□ -0.97
SPG11-209ENST00000558253 NR3C2P08235 984 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 CAPN2P17655 700 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 PTPRAP18433 802 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 EIF2AK2P19525 551 aaKnown RBP8.98□□□□□ -0.97
SPG11-209ENST00000558253 ICAM3P32942 547 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 MATR3P43243 847 aaKnown RBP eCLIP8.98□□□□□ -0.97
SPG11-209ENST00000558253 MXI1P50539 228 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms