RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 B4GALT5O43286 388 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 MGEA5O60502 916 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 ZNF623O75123 536 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 TOM1L1O75674 476 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 PRPF6O94906 941 aaKnown RBP11.48□□□□□ -0.57
LRRC28-204ENST00000558172 EOMESO95936 686 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 STAG3L1P0CL83 205 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 PPP1R2P41236 205 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 LIG4P49917 911 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 CASP5P51878 434 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 WDR5P61964 334 aaKnown RBP11.48□□□□□ -0.57
LRRC28-204ENST00000558172 FAM189BP81408 668 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 BMT2Q1RMZ1 405 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 TCTN1Q2MV58 587 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 KLHL40Q2TBA0 621 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 COBLL1Q53SF7 1204 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 CCDC183Q5T5S1 534 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 RASIP1Q5U651 963 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 SLFN12LQ6IEE8 588 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 HACE1Q8IYU2 909 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 MYOCDQ8IZQ8 938 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 SYCP3Q8IZU3 236 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 PHOSPHO2Q8TCD6 241 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 PGBD4Q96DM1 585 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 CPB2Q96IY4 423 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 SLC9A7Q96T83 725 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 TCHPQ9BT92 498 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 TARS2Q9BW92 718 aaKnown RBP11.48□□□□□ -0.57
LRRC28-204ENST00000558172 TRIM6Q9C030 488 aaPredicted RBP11.48□□□□□ -0.57
LRRC28-204ENST00000558172 ELAC1Q9H777 363 aaKnown RBP11.48□□□□□ -0.57
LRRC28-204ENST00000558172 CGNQ9P2M7 1197 aaKnown RBP11.48□□□□□ -0.57
LRRC28-204ENST00000558172 SLC4A7Q9Y6M7 1214 aa11.48□□□□□ -0.57
LRRC28-204ENST00000558172 FNDC1Q4ZHG4 1894 aaPredicted RBP11.48□□□□□ -0.57
LRRC28-204ENST00000558172 TDRD15B5MCY1 1934 aaKnown RBP11.47□□□□□ -0.57
LRRC28-204ENST00000558172 GBF1Q92538 1859 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.47□□□□□ -0.57
LRRC28-204ENST00000558172 A0A1W2PPC1 479 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 C9IYK1 514 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 HNRNPDLO14979 420 aaKnown RBP11.47□□□□□ -0.57
LRRC28-204ENST00000558172 CLDN3O15551 220 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 EDN1P05305 212 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 MCF2P10911 925 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 PROZP22891 400 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 STIM1Q13586 685 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 SHHQ15465 462 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 DCAF4L1Q3SXM0 396 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 UBXN11Q5T124 520 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 PRPF38BQ5VTL8 546 aaKnown RBP11.47□□□□□ -0.57
LRRC28-204ENST00000558172 MPZL3Q6UWV2 235 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 MRPL10Q7Z7H8 261 aaKnown RBP11.47□□□□□ -0.57
LRRC28-204ENST00000558172 GUF1Q8N442 669 aaKnown RBP11.47□□□□□ -0.57
LRRC28-204ENST00000558172 KIAA0895Q8NCT3 520 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 SCFD1Q8WVM8 642 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 LINC01599Q8WXQ3 324 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 RSPH1Q8WYR4 309 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 ERCC4Q92889 916 aaPredicted RBP11.47□□□□□ -0.57
LRRC28-204ENST00000558172 TOP1MTQ969P6 601 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 RNPC3Q96LT9 517 aaKnown RBP11.47□□□□□ -0.57
LRRC28-204ENST00000558172 GBP3Q9H0R5 595 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 PDZD7Q9H5P4 517 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 PTPRHQ9HD43 1115 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 UBN1Q9NPG3 1134 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 FAM105AQ9NUU6 356 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 TMEM161AQ9NX61 479 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 PCDH10Q9P2E7 1040 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 MAN1B1Q9UKM7 699 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 LRFN2Q9ULH4 789 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 PCDHB7Q9Y5E2 793 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 STYXL1Q9Y6J8 313 aa11.47□□□□□ -0.57
LRRC28-204ENST00000558172 TTLL13PA6NNM8 815 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 KIAA0391O15091 583 aaKnown RBP11.46□□□□□ -0.57
LRRC28-204ENST00000558172 HOXA2O43364 376 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 LETM1O95202 739 aaPredicted RBP11.46□□□□□ -0.57
LRRC28-204ENST00000558172 GARTP22102 1010 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 MATR3P43243 847 aaKnown RBP eCLIP11.46□□□□□ -0.57
LRRC28-204ENST00000558172 MCL1Q07820 350 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 MORC3Q14149 939 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 NFKBIBQ15653 356 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 KYAT1Q16773 422 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 KNOP1Q1ED39 458 aaKnown RBP11.46□□□□□ -0.57
LRRC28-204ENST00000558172 ZNF568Q3ZCX4 644 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 C9orf50Q5SZB4 431 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 CHRDL2Q6WN34 429 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.46□□□□□ -0.57
LRRC28-204ENST00000558172 RBM43Q6ZSC3 357 aaKnown RBP11.46□□□□□ -0.57
LRRC28-204ENST00000558172 HS2ST1Q7LGA3 356 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 ECHDC2Q86YB7 292 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 NPAS4Q8IUM7 802 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 TDHQ8IZJ6 230 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 GLIS3Q8NEA6 775 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 GOLGA5Q8TBA6 731 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 FGFBP2Q9BYJ0 223 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 PRO3102Q9H379 93 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 USP20Q9Y2K6 914 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 GDAQ9Y2T3 454 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 PCDHB2Q9Y5E7 798 aa11.46□□□□□ -0.57
LRRC28-204ENST00000558172 PDCD11Q14690 1871 aaKnown RBP11.45□□□□□ -0.58
LRRC28-204ENST00000558172 ANKRD63C9JTQ0 380 aa11.45□□□□□ -0.58
LRRC28-204ENST00000558172 PDXKO00764 312 aa11.45□□□□□ -0.58
LRRC28-204ENST00000558172 NPTXRO95502 500 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms