RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 TCHPQ9BT92 498 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 TARS2Q9BW92 718 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 TRAIPQ9BWF2 469 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 TTYH1Q9H313 450 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 SEMA6BQ9H3T3 888 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 GOLPH3LQ9H4A5 285 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 PDZD7Q9H5P4 517 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 MRPL44Q9H9J2 332 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 USP25Q9UHP3 1055 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 HPSEQ9Y251 543 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 INPP5FQ9Y2H2 1132 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 IPPQ9Y573 584 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 ACTN4O43707 911 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 ZNF623O75123 536 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 EDN1P05305 212 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 SLFN14P0C7P3 912 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 HARSP12081 509 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 ATF7P17544 494 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 CASP1P29466 404 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 MATR3P43243 847 aaKnown RBP eCLIP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 EEF1DP3Q658K8 133 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 GLB1LQ6UWU2 654 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 TAS1R3Q7RTX0 852 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 APBB1IPQ7Z5R6 666 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 ZBTB33Q86T24 672 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 ZNF598Q86UK7 904 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 GRAMD1CQ8IYS0 662 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 SLC17A8Q8NDX2 589 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 SP7Q8TDD2 431 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 ZNF689Q96CS4 500 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 PAGE5Q96GU1 130 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 TGS1Q96RS0 853 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 TRIM9Q9C026 710 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 TMEM117Q9H0C3 514 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 PARP2Q9UGN5 583 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 HES2Q9Y543 173 aa12.58□□□□□ -0.4
CCDC88C-212ENST00000556767 FAM237AA0A1B0GTK4 181 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 MEIS3P2A8K0S8 358 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 ZNF202O95125 648 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 GCNT3O95395 438 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 LIG4P49917 911 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 COASYQ13057 564 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 GRIN2CQ14957 1233 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 ZNF568Q3ZCX4 644 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 ZC2HC1CQ53FD0 456 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 CLLU1OSQ5K130 101 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 SPRED2Q7Z698 418 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 MRPL10Q7Z7H8 261 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 SMG8Q8ND04 991 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 CCDC34Q96HJ3 373 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 ACO2Q99798 780 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 C7orf25Q9BPX7 421 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 C17orf80Q9BSJ5 609 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 RNF39Q9H2S5 420 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 NXF3Q9H4D5 531 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 PRDM12Q9H4Q4 367 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 RSAD1Q9HA92 442 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 RC3H2Q9HBD1 1191 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 RNF19AQ9NV58 838 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 ANKFY1Q9P2R3 1169 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 SEL1LQ9UBV2 794 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 TBX20Q9UMR3 447 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 TNFSF13BQ9Y275 285 aa12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 MRPL42Q9Y6G3 142 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-212ENST00000556767 RFXAPO00287 272 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 HNRNPDLO14979 420 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 SCP2P22307 547 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 AKAP5P24588 427 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 ABCD1P33897 745 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 CTNNB1P35222 781 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 ERVK-21P61565 698 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 RNASELQ05823 741 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 CUL4BQ13620 913 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 DCAF4L1Q3SXM0 396 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 AGMOQ6ZNB7 445 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 KRBA2Q6ZNG9 492 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 ZNF720Q7Z2F6 126 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 TMEM192Q8IY95 271 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 LRRC43Q8N309 656 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 URGCPQ8TCY9 931 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 CASD1Q96PB1 797 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 GAD1Q99259 594 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 MRPL9Q9BYD2 267 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 UBN1Q9NPG3 1134 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 TYW1Q9NV66 732 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 KLK14Q9P0G3 267 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 GDAQ9Y2T3 454 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 RWDD3Q9Y3V2 267 aa12.56□□□□□ -0.4
CCDC88C-212ENST00000556767 FRMD3A2A2Y4 597 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 GTPBP6O43824 516 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 GADD45BO75293 160 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 OFD1O75665 1012 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 TOM1L1O75674 476 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 MYBP10242 640 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 MLH1P40692 756 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 OSTNP61366 133 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 GTF2BQ00403 316 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 EPC2Q52LR7 807 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 NOMO2Q5JPE7 1267 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 MPZL3Q6UWV2 235 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms