RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 COL11A1P12107 1806 aaPredicted RBP19.47■□□□□ 0.71
VIM-209ENST00000544301 SHOX2O60902 331 aaPredicted RBP19.46■□□□□ 0.71
VIM-209ENST00000544301 RGS20O76081 388 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 SGPL1O95470 568 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 IVLP07476 585 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 DSG3P32926 999 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 USP8P40818 1118 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 OAZ1P54368 228 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 SOX10P56693 466 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 PARD3BQ8TEW8 1205 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 SPIRE2Q8WWL2 714 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 KIFAP3Q92845 792 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 KREMEN1Q96MU8 473 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 WRNIP1Q96S55 665 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.46■□□□□ 0.713e-13■■■■□ 19.8
VIM-209ENST00000544301 ZNF214Q9UL59 606 aaPredicted RBP19.46■□□□□ 0.71
VIM-209ENST00000544301 ADAMTS5Q9UNA0 930 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 FGGP02679 453 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 CHRNB2P17787 502 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 HSPA9P38646 679 aaKnown RBP19.46■□□□□ 0.71
VIM-209ENST00000544301 HMGCS2P54868 508 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 TCEAL1Q15170 157 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 NSUN6Q8TEA1 469 aaKnown RBP19.46■□□□□ 0.71
VIM-209ENST00000544301 CCDC127Q96BQ5 260 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 AMACRQ9UHK6 382 aa19.46■□□□□ 0.71
VIM-209ENST00000544301 NOCTQ9UK39 431 aaKnown RBP19.46■□□□□ 0.71
VIM-209ENST00000544301 BRCA1P38398 1863 aaKnown RBP19.45■□□□□ 0.7
VIM-209ENST00000544301 ZNF233A6NK53 670 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 HLTFQ14527 1009 aaKnown RBP eCLIP19.45■□□□□ 0.74e-7■□□□□ 8.4
VIM-209ENST00000544301 PRAMEF18Q5VWM3 479 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 KRT39Q6A163 491 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 SLC39A4Q6P5W5 647 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 NOP9Q86U38 636 aaKnown RBP19.45■□□□□ 0.7
VIM-209ENST00000544301 DDX42Q86XP3 938 aaKnown RBP eCLIP19.45■□□□□ 0.7
VIM-209ENST00000544301 PPM1KQ8N3J5 372 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 EPS8L1Q8TE68 723 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 ATP6V0A1Q93050 837 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 C12orf42Q96LP6 360 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 PCDHB18PQ96TA0 734 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 CARD9Q9H257 536 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 C17orf75Q9HAS0 396 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 FZD1Q9UP38 647 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 TELO2Q9Y4R8 837 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 PFASO15067 1338 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 PHIPQ8WWQ0 1821 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 WDR81Q562E7 1941 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 RTN2O75298 545 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 KRT14P02533 472 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 MFAP3P55082 362 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 GPC5P78333 572 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 TMEM132BQ14DG7 1078 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 SWSAP1Q6NVH7 229 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 MAATS1Q7Z4T9 603 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 CD302Q8IX05 232 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 CCDC26Q8TAB7 109 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 POP1Q99575 1024 aaKnown RBP19.45■□□□□ 0.7
VIM-209ENST00000544301 TMEM8AQ9HCN3 771 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 CTTNBP2NLQ9P2B4 639 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 COQ4Q9Y3A0 265 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 ALG6Q9Y672 507 aa19.45■□□□□ 0.7
VIM-209ENST00000544301 TULP1O00294 542 aaPredicted RBP19.44■□□□□ 0.7
VIM-209ENST00000544301 PSAPP07602 524 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 C11orf63Q6NUN7 778 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 TMC2Q8TDI7 906 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 SHC3Q92529 594 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 RNPC3Q96LT9 517 aaKnown RBP19.44■□□□□ 0.7
VIM-209ENST00000544301 MFSD14AQ96MC6 490 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 FBXL18Q96ME1 805 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 PDLIM7Q9NR12 457 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 NR2E1Q9Y466 385 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 KIAA1217Q5T5P2 1943 aa19.44■□□□□ 0.7
VIM-209ENST00000544301 FZD9O00144 591 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 CYP26A1O43174 497 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 DKC1O60832 514 aaKnown RBP eCLIP19.43■□□□□ 0.7
VIM-209ENST00000544301 GPC3P51654 580 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 POU5F1Q01860 360 aaKnown RBP19.43■□□□□ 0.7
VIM-209ENST00000544301 PRPF4BQ13523 1007 aaKnown RBP19.43■□□□□ 0.7
VIM-209ENST00000544301 FOXR1Q6PIV2 292 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 HELQQ8TDG4 1101 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 ALG3Q92685 438 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 NEUROG2Q9H2A3 272 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 JPH1Q9HDC5 661 aaPredicted RBP19.43■□□□□ 0.7
VIM-209ENST00000544301 TOPORSQ9NS56 1045 aaPredicted RBP19.43■□□□□ 0.7
VIM-209ENST00000544301 CYP39A1Q9NYL5 469 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 ADGRA3Q8IWK6 1321 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 NFASCO94856 1347 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 TTI1O43156 1089 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 SLC47A2Q86VL8 602 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 POMGNT1Q8WZA1 660 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 ACP6Q9NPH0 428 aa19.43■□□□□ 0.7
VIM-209ENST00000544301 ARID2Q68CP9 1835 aa19.42■□□□□ 0.7
VIM-209ENST00000544301 C19orf81C9J6K1 198 aa19.42■□□□□ 0.7
VIM-209ENST00000544301 GZMAP12544 262 aa19.42■□□□□ 0.7
VIM-209ENST00000544301 CYP24A1Q07973 514 aa19.42■□□□□ 0.7
VIM-209ENST00000544301 ANGEL2Q5VTE6 544 aaKnown RBP19.42■□□□□ 0.7
VIM-209ENST00000544301 NAA35Q5VZE5 725 aa19.42■□□□□ 0.7
VIM-209ENST00000544301 CCDC60Q8IWA6 550 aaPredicted RBP19.42■□□□□ 0.7
VIM-209ENST00000544301 MCPH1Q8NEM0 835 aa19.42■□□□□ 0.7
VIM-209ENST00000544301 SEC14L1Q92503 715 aa19.42■□□□□ 0.7
VIM-209ENST00000544301 NAP1L3Q99457 506 aaPredicted RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms