RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 AGAP3Q96P47 875 aa10.8□□□□□ -0.68
PDGFRB-207ENST00000520579 MOV10L1Q9BXT6 1211 aaKnown RBP10.8□□□□□ -0.68
PDGFRB-207ENST00000520579 THAP2Q9H0W7 228 aa10.8□□□□□ -0.68
PDGFRB-207ENST00000520579 PRDM11Q9NQV5 511 aa10.8□□□□□ -0.68
PDGFRB-207ENST00000520579 BLOC1S4Q9NUP1 217 aa10.8□□□□□ -0.68
PDGFRB-207ENST00000520579 ATXN10Q9UBB4 475 aa10.8□□□□□ -0.68
PDGFRB-207ENST00000520579 GGA2Q9UJY4 613 aa10.8□□□□□ -0.68
PDGFRB-207ENST00000520579 NWD2Q9ULI1 1742 aa10.8□□□□□ -0.68
PDGFRB-207ENST00000520579 NVLO15381 856 aaKnown RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CYTH3O43739 400 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CACNA2D1P54289 1103 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CHRNDQ07001 517 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 ITIH4Q14624 930 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CERKLQ49MI3 558 aaPredicted RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 WDR78Q5VTH9 848 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 LRRC47Q8N1G4 583 aaKnown RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 MAGEC3Q8TD91 643 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 TGFBRAP1Q8WUH2 860 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 LRRC37BQ96QE4 947 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 PHF12Q96QT6 1004 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 UBN1Q9NPG3 1134 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 ASAP2O43150 1006 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 STIP1P31948 543 aaKnown RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CHKAP35790 457 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 MMP13P45452 471 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 PEX5P50542 639 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 KCNA1Q09470 495 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 SGSM1Q2NKQ1 1148 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CRELD2Q6UXH1 353 aaPredicted RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 ZNF662Q6ZS27 426 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 ZNF572Q7Z3I7 529 aaPredicted RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CYP4X1Q8N118 509 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 RBM46Q8TBY0 533 aaKnown RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 STMN2Q93045 179 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 PPP1R14BQ96C90 147 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 TLCD1Q96CP7 247 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 ABHD8Q96I13 439 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CCSER1Q9C0I3 900 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 NDEL1Q9GZM8 345 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 TUBGCP4Q9UGJ1 667 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 TESPA1A2RU30 521 aaPredicted RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 DDX3XO00571 662 aaKnown RBP eCLIP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 RPL13P26373 211 aaKnown RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 SLC16A2P36021 539 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CASP5P51878 434 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 EIF3BP55884 814 aaKnown RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 NMD3Q96D46 503 aaKnown RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 PNMA5Q96PV4 448 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 SIKE1Q9BRV8 207 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 TBC1D10AQ9BXI6 508 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 LRRC27Q9C0I9 530 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 CDC42EP4Q9H3Q1 356 aaKnown RBP10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 EMILIN3Q9NT22 766 aa10.79□□□□□ -0.68
PDGFRB-207ENST00000520579 RGPD8O14715 1765 aaPredicted RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 PFASO15067 1338 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 GOLGA8SH3BPF8 625 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 GOLGA8MH3BSY2 632 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 CCDC188H7C350 402 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 CAPN9O14815 690 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 XRCC5P13010 732 aaKnown RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 SNAP25P60880 206 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 BTKQ06187 659 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 MGAT5Q09328 741 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 FIGNQ5HY92 759 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 SYCP2LQ5T4T6 812 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 REXO1Q8N1G1 1221 aaKnown RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 PDCD7Q8N8D1 485 aaKnown RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 P3H4Q92791 437 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 UTP4Q969X6 686 aaKnown RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 ERLEC1Q96DZ1 483 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 RAB3IPQ96QF0 476 aaPredicted RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 C7orf25Q9BPX7 421 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 RNPEPL1Q9HAU8 725 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 SLIT1O75093 1534 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 N4BP2Q86UW6 1770 aaPredicted RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 POTEFA5A3E0 1075 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 RASA4BC9J798 803 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 RASA4O43374 803 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 ZBED4O75132 1171 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 GCNT3O95395 438 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 GSTA1P08263 222 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 POTEIP0CG38 1075 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 TAL1P17542 331 aaPredicted RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 ADCY8P40145 1251 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 RASSF2P50749 326 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 POTEGQ6S5H5 508 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 POTEEQ6S8J3 1075 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 NT5DC3Q86UY8 548 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 ZBTB8BQ8NAP8 495 aaPredicted RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 RUBCNQ92622 972 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 DNAJC1Q96KC8 554 aaKnown RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 CRAMP1Q96RY5 1269 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 DENND2DQ9H6A0 471 aaPredicted RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 C6orf50Q9HD87 102 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 PFDN4Q9NQP4 134 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 NMRK1Q9NWW6 199 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 WDR35Q9P2L0 1181 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 CHMP2AO43633 222 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 PDE8AO60658 829 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 STAT1P42224 750 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms