RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 NHLH1Q02575 133 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 CR1LQ2VPA4 569 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 NAALADL2Q58DX5 795 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 FAM26FQ5R3K3 315 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 LIMS2Q7Z4I7 341 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 USP38Q8NB14 1042 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 CHST13Q8NET6 341 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 ZNF333Q96JL9 665 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 ZSWIM3Q96MP5 696 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 UHRF1Q96T88 793 aaPredicted RBP6.53□□□□□ -1.36
NUP54-218ENST00000515460 EPB41L1Q9H4G0 881 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 ZNF277Q9NRM2 450 aaPredicted RBP6.53□□□□□ -1.36
NUP54-218ENST00000515460 CLDND1Q9NY35 253 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 FBXL7Q9UJT9 491 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 PTPN22Q9Y2R2 807 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 NPFFR2Q9Y5X5 522 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 GPR179Q6PRD1 2367 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 TJP1Q07157 1748 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 MRC1P22897 1456 aa6.53□□□□□ -1.36
NUP54-218ENST00000515460 DCHS1Q96JQ0 3298 aa6.52□□□□□ -1.36
NUP54-218ENST00000515460 TPRP12270 2363 aaKnown RBP6.52□□□□□ -1.37
NUP54-218ENST00000515460 DLEC1Q9Y238 1755 aa6.52□□□□□ -1.37
NUP54-218ENST00000515460 KLRG2A4D1S0 409 aaPredicted RBP6.52□□□□□ -1.37
NUP54-218ENST00000515460 DYNC1I1O14576 645 aa6.52□□□□□ -1.37
NUP54-218ENST00000515460 HGSO14964 777 aaPredicted RBP6.52□□□□□ -1.37
NUP54-218ENST00000515460 CAPNS1P04632 268 aa6.52□□□□□ -1.37
NUP54-218ENST00000515460 SRGNP10124 158 aa6.52□□□□□ -1.37
NUP54-218ENST00000515460 PIP4K2AP48426 406 aaPredicted RBP6.52□□□□□ -1.37
NUP54-218ENST00000515460 HSP90AB4PQ58FF6 505 aa6.52□□□□□ -1.37
NUP54-218ENST00000515460 GLB1LQ6UWU2 654 aa6.52□□□□□ -1.37
NUP54-218ENST00000515460 RSPO2Q6UXX9 243 aaPredicted RBP6.52□□□□□ -1.37
NUP54-218ENST00000515460 ZNF669Q96BR6 464 aaPredicted RBP6.52□□□□□ -1.37
NUP54-218ENST00000515460 LCORQ96JN0 433 aaPredicted RBP6.52□□□□□ -1.37
NUP54-218ENST00000515460 SAMD11Q96NU1 681 aa6.52□□□□□ -1.37
NUP54-218ENST00000515460 GPR27Q9NS67 375 aa6.52□□□□□ -1.37
NUP54-218ENST00000515460 FLNBO75369 2602 aaKnown RBP6.52□□□□□ -1.37
NUP54-218ENST00000515460 CACNA1SQ13698 1873 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 CCDC66A2RUB6 948 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 CYP1A1P04798 512 aaPredicted RBP6.51□□□□□ -1.37
NUP54-218ENST00000515460 FGFR1P11362 822 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 LCP1P13796 627 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 GRIA2P42262 883 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 ADAM9Q13443 819 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 EMC4Q5J8M3 183 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 PRR31Q5SQ13 230 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 STEAP3Q658P3 488 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 CPZQ66K79 652 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 DENND5AQ6IQ26 1287 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 STYK1Q6J9G0 422 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 CTR9Q6PD62 1173 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 OLFM4Q6UX06 510 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 USP53Q70EK8 1073 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 USP50Q70EL3 339 aaPredicted RBP6.51□□□□□ -1.37
NUP54-218ENST00000515460 DPH6Q7L8W6 267 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 GPC2Q8N158 579 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 OTUD6BQ8N6M0 293 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 ARRDC4Q8NCT1 418 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 MASTLQ96GX5 879 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 GDF15Q99988 308 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 ST6GALNAC2Q9UJ37 374 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 PCDHB4Q9Y5E5 795 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 CEMIPQ8WUJ3 1361 aa6.51□□□□□ -1.37
NUP54-218ENST00000515460 ZBED9Q6R2W3 1325 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 NPC1L1Q9UHC9 1359 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 TRAV20A0A0B4J274 112 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 KRIT1O00522 736 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 DLX3O60479 287 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 SNRPA1P09661 255 aaKnown RBP6.5□□□□□ -1.37
NUP54-218ENST00000515460 ZNF20P17024 532 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 ATP2B1P20020 1258 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 CALRP27797 417 aaKnown RBP6.5□□□□□ -1.37
NUP54-218ENST00000515460 PRKAR2BP31323 418 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 ZXDAP98168 799 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 LMOD3Q0VAK6 560 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 DCTN1Q14203 1278 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 TMEM31Q5JXX7 168 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 CLEC4GQ6UXB4 293 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 MCM10Q7L590 875 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 NBPF5PQ86XG9 351 aaPredicted RBP6.5□□□□□ -1.37
NUP54-218ENST00000515460 CNBD1Q8NA66 436 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 PHOSPHO1Q8TCT1 267 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 DCAF4Q8WV16 495 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 TOE1Q96GM8 510 aaKnown RBP6.5□□□□□ -1.37
NUP54-218ENST00000515460 TANGO6Q9C0B7 1094 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 L2HGDHQ9H9P8 463 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 CROTQ9UKG9 612 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 SH3BP1Q9Y3L3 701 aa6.5□□□□□ -1.37
NUP54-218ENST00000515460 COL3A1P02461 1466 aaPredicted RBP6.49□□□□□ -1.37
NUP54-218ENST00000515460 FZD9O00144 591 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 PRODHO43272 600 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 NPR1P16066 1061 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 TNFRSF1AP19438 455 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 ST5P78524 1137 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 ZKSCAN8Q15776 578 aaPredicted RBP6.49□□□□□ -1.37
NUP54-218ENST00000515460 HLFQ16534 295 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 ZFYVE21Q9BQ24 234 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 HTATIP2Q9BUP3 242 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 PHF20Q9BVI0 1012 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 KRTAP3-1Q9BYR8 98 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 GBA2Q9HCG7 927 aaPredicted RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms