RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PRPF3O43395 683 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 ANPEPP15144 967 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 MPRIPQ6WCQ1 1025 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 SREK1Q8WXA9 508 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 HEPHQ9BQS7 1158 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 PTPN22Q9Y2R2 807 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 ATP6V0A2Q9Y487 856 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 KLRC4O43908 158 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 FGFR1OPO95684 399 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 BMP15O95972 392 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 MAP3K10Q02779 954 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 C16orf72Q14CZ0 275 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 CLPPQ16740 277 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 SPTY2D1Q68D10 685 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 NLRP9Q7RTR0 991 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 ZBED8Q8IZ13 594 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 SPATA17Q96L03 361 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 GRIP2Q9C0E4 1043 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 NPHS2Q9NP85 383 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 BABAM1Q9NWV8 329 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 DNAJC5BQ9UF47 199 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 KIAA0391O15091 583 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 RPL21P46778 160 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 ATP2C1P98194 919 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 MAN2A1Q16706 1144 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 PDCD4Q53EL6 469 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 FAM186BQ8IYM0 893 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 SLC25A41Q8N5S1 370 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 APPBP2Q92624 585 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 SHISA4Q96DD7 197 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 MAML3Q96JK9 1138 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 LSM14BQ9BX40 385 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 ARMC7Q9H6L4 198 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 TRPV5Q9NQA5 729 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 ARL8BQ9NVJ2 186 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 FADS3Q9Y5Q0 445 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 KANSL1LA0AUZ9 987 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 CES2O00748 559 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 PGM1P36871 562 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 UBA7P41226 1012 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 EPS15P42566 896 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 POU5F1Q01860 360 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 ZBTB16Q05516 673 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 ITGA9Q13797 1035 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 RC3H1Q5TC82 1133 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 CCDC127Q96BQ5 260 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 C18orf8Q96DM3 657 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 PYM1Q9BRP8 204 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 NUP85Q9BW27 656 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 TMEM60Q9H2L4 133 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 TIMMDC1Q9NPL8 285 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 NDUFA13Q9P0J0 144 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 HESX1Q9UBX0 185 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 TBC1D30Q9Y2I9 924 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 V9GY48 417 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 WDR19Q8NEZ3 1342 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 RBAK-RBAKDNI3L0D1 243 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 RHOBTB3O94955 611 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 STAMBPO95630 424 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 GAS8O95995 478 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 SGMS1Q86VZ5 419 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 SDR16C5Q8N3Y7 309 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 SH3RF3Q8TEJ3 882 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 ZNF594Q96JF6 807 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 KLHL4Q9C0H6 718 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 TRPC7Q9HCX4 862 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 ATAD3AQ9NVI7 634 aa12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 HBS1LQ9Y450 684 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-213ENST00000511496 MYH4Q9Y623 1939 aa12.83□□□□□ -0.35
LIMCH1-213ENST00000511496 CLPTM1O96005 669 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 ATP5DP30049 168 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 TUFMP49411 452 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 CYTH1Q15438 398 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 ACAD11Q709F0 780 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 ZFP28Q8NHY6 868 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 DISC1Q9NRI5 854 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 FAM32AQ9Y421 112 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 STK24Q9Y6E0 443 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 IGSF1Q8N6C5 1336 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 TRAFD1O14545 582 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 MYCLP1P12525 358 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 CETN2P41208 172 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 ZAP70P43403 619 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 LPIN1Q14693 890 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 WTAPQ15007 396 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 INAQ16352 499 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 MMEL1Q495T6 779 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 NADK2Q4G0N4 442 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 EPM2AIP1Q7L775 607 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 CLNKQ7Z7G1 428 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 SIX5Q8N196 739 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 ZNF713Q8N859 430 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 TPCN2Q8NHX9 752 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 IRGQQ8WZA9 623 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 PPP1R10Q96QC0 940 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 TBCCD1Q9NVR7 557 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 RABL2AQ9UBK7 228 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 STARD13Q9Y3M8 1113 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 UTYO14607 1347 aa12.83□□□□□ -0.36
LIMCH1-213ENST00000511496 CEP170BQ9Y4F5 1589 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms