RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 TMEM9BQ9NQ34 198 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 EMILIN3Q9NT22 766 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ZBTB21Q9ULJ3 1066 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 MRPL11Q9Y3B7 192 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 BTAF1O14981 1849 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 OPLAHO14841 1288 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 CHUKO15111 745 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 MGEA5O60502 916 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 DNAJC6O75061 913 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 IMPDH2P12268 514 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ARHGAP25P42331 645 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 IFT88Q13099 833 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ARHGAP29Q52LW3 1261 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 CCDC122Q5T0U0 273 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 CCSAPQ6IQ19 270 aaPredicted RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 GLYCTKQ8IVS8 523 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ANKRD42Q8N9B4 389 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ZNF653Q96CK0 615 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 PHOX2BQ99453 314 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 TCF25Q9BQ70 676 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 REPIN1Q9BWE0 567 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 SEMA4GQ9NTN9 838 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ANKRD33BA6NCL7 494 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 DDTLA6NHG4 134 aaPredicted RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 PER1O15534 1290 aaPredicted RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 ZSCAN12O43309 604 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ATP8B1O43520 1251 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 EEF2P13639 858 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 CCR3P51677 355 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 DGKEP52429 567 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ARHGAP4P98171 946 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 SPECC1LQ69YQ0 1117 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ZSCAN25Q6NSZ9 544 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 TMC6Q7Z403 805 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 VPS36Q86VN1 386 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 DBF4BQ8NFT6 615 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 PANK1Q8TE04 598 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 RUFY2Q8WXA3 655 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 TAF4BQ92750 862 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 GOLGA1Q92805 767 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ATG4CQ96DT6 458 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 VPS18Q9P253 973 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 SUN2Q9UH99 717 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 KLF15Q9UIH9 416 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ERICH2A1L162 156 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 LSM1O15116 133 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 RETP07949 1114 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 KLRK1P26718 216 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 NUP62P37198 522 aaPredicted RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 POU5F1BQ06416 359 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ADCY1Q08828 1119 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 BNIP1Q12981 228 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 USP39Q53GS9 565 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 COBLL1Q53SF7 1204 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 OLFML2BQ68BL8 750 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 PDE12Q6L8Q7 609 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 B4GALNT4Q76KP1 1039 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 NOP9Q86U38 636 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 CEP70Q8NHQ1 597 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 GABPB2Q8TAK5 448 aaPredicted RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 SNX19Q92543 992 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 IQCDQ96DY2 449 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 HNRNPABQ99729 332 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 PHF20Q9BVI0 1012 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ADAM33Q9BZ11 813 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 NDEL1Q9GZM8 345 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 RAVER2Q9HCJ3 691 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 ZNF304Q9HCX3 659 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 COMMD8Q9NX08 183 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 RGL1Q9NZL6 768 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 H0Y3Z8 333 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 TSC22D2O75157 780 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 LAG3P18627 525 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 IL4RP24394 825 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 BMPR1AP36894 532 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 TBX4P57082 545 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 GEMIN4P57678 1058 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 EIF4A1P60842 406 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 FKBP1AP62942 108 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 FAAP100Q0VG06 881 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 NR1H3Q13133 447 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 COL19A1Q14993 1142 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 CABS1Q96KC9 395 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 SPAG5Q96R06 1193 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 COQ7Q99807 217 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 MIR1-1HGQ9H1L0 117 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 PLCB1Q9NQ66 1216 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 TRMT13Q9NUP7 481 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 MORF4L1Q9UBU8 362 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 DAGLAQ9Y4D2 1042 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 MRPL42Q9Y6G3 142 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.51□□□□□ -1.53
USP54-216ENST00000498143 AKAP12Q02952 1782 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 WDR91A4D1P6 747 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 CYTH3O43739 400 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 IDEP14735 1019 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 DNM2P50570 870 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 GYS2P54840 703 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 TAF11Q15544 211 aa5.51□□□□□ -1.53
USP54-216ENST00000498143 SMAD2Q15796 467 aaKnown RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms