RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 HOOK1Q9UJC3 728 aaKnown RBP19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 PCDHB2Q9Y5E7 798 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 A0A0U1RQF3 1178 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 MEIS3P2A8K0S8 358 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 ATF7P17544 494 aaPredicted RBP19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 SARSP49591 514 aaKnown RBP19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 ISM2Q6H9L7 571 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 SLC27A1Q6PCB7 646 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 ECHDC2Q86YB7 292 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 MAP4K3Q8IVH8 894 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 KIAA0895Q8NCT3 520 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 LPPQ93052 612 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 TOP1MTQ969P6 601 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 PCDHB13Q9Y5F0 798 aa19.62■□□□□ 0.73
PDLIM7-208ENST00000493815 HNRNPDLO14979 420 aaKnown RBP19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 HARSP12081 509 aaKnown RBP19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 HOXD13P35453 343 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 GATMP50440 423 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 FAM189BP81408 668 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 L1TD1Q5T7N2 865 aaKnown RBP19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 EPM2AIP1Q7L775 607 aaPredicted RBP19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 HERC6Q8IVU3 1022 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 NELFCDQ8IXH7 590 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 CRIPAKQ8N1N5 446 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 SCFD1Q8WVM8 642 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 SMARCE1Q969G3 411 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 TCHPQ9BT92 498 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 APOL6Q9BWW8 343 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 TRIM6Q9C030 488 aaPredicted RBP19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 CLSTN2Q9H4D0 955 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 NXF3Q9H4D5 531 aaKnown RBP19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 GDAQ9Y2T3 454 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 PCDHB7Q9Y5E2 793 aa19.61■□□□□ 0.73
PDLIM7-208ENST00000493815 TRIOBPQ9H2D6 2365 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 ANKRD63C9JTQ0 380 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 N4BP3O15049 544 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 RHOBTB3O94955 611 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 SMC2O95347 1197 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 FGFR1P11362 822 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 MYOGP15173 224 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 LIG4P49917 911 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 SLC39A4Q6P5W5 647 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 ELOA2Q8IYF1 753 aaPredicted RBP19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 SMYD4Q8IYR2 804 aaPredicted RBP19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 SMG8Q8ND04 991 aaKnown RBP19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 SPATA20Q8TB22 786 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 KCNN1Q92952 543 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 ACCSQ96QU6 501 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 SLC9A7Q96T83 725 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 ZBED2Q9BTP6 218 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 HAPLN2Q9GZV7 340 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 RNF39Q9H2S5 420 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 PTPRHQ9HD43 1115 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 LRFN2Q9ULH4 789 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 MAPK8IP1Q9UQF2 711 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 TNFSF13BQ9Y275 285 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 IPPQ9Y573 584 aa19.6■□□□□ 0.73
PDLIM7-208ENST00000493815 BIN1O00499 593 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 ABLIM1O14639 778 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 GJB5O95377 273 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 PBX2P40425 430 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 MATR3P43243 847 aaKnown RBP eCLIP19.59■□□□□ 0.735e-11■■■□□ 18.9
PDLIM7-208ENST00000493815 ZNF568Q3ZCX4 644 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 ZNF598Q86UK7 904 aaKnown RBP19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 SYCP3Q8IZU3 236 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 PHOSPHO2Q8TCD6 241 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 CCDC47Q96A33 483 aaKnown RBP19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 CCDC51Q96ER9 411 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 TRAIPQ9BWF2 469 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 CDT1Q9H211 546 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 PTPRSQ13332 1948 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 TTC3P53804 2025 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 TOM1L1O75674 476 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 SCP2P22307 547 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 PROZP22891 400 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 PSMD2Q13200 908 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 KCNB1Q14721 858 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 SEZ6Q53EL9 994 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 ZPBP2Q6X784 338 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 NPAS4Q8IUM7 802 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 CEP120Q8N960 986 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 HVCN1Q96D96 273 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 GSDMAQ96QA5 445 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 ADPGKQ9BRR6 497 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 NUP62CLQ9H1M0 184 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 TMEM161AQ9NX61 479 aa19.59■□□□□ 0.73
PDLIM7-208ENST00000493815 AKAP5P24588 427 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 RAB27AP51159 221 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 OSTNP61366 133 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 ALCAMQ13740 583 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 MPZL3Q6UWV2 235 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 STXBP4Q6ZWJ1 553 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 ZNF507Q8TCN5 953 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 RNF19AQ9NV58 838 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 MAN1B1Q9UKM7 699 aa19.58■□□□□ 0.72
PDLIM7-208ENST00000493815 ZMYM2Q9UBW7 1377 aa19.57■□□□□ 0.72
PDLIM7-208ENST00000493815 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.57■□□□□ 0.72
PDLIM7-208ENST00000493815 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.57■□□□□ 0.72
PDLIM7-208ENST00000493815 EIF3DO15371 548 aaKnown RBP eCLIP19.57■□□□□ 0.72
PDLIM7-208ENST00000493815 CLDN3O15551 220 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms