RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TDP1Q9NUW8 608 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 CPNE7Q9UBL6 633 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 ABCF2Q9UG63 623 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 TMEM59LQ9UK28 342 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 DBR1Q9UK59 544 aaKnown RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 KAT6BQ8WYB5 2073 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 ZC3H12DA2A288 527 aaKnown RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 FFAR2O15552 330 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 CSTBP04080 98 aaKnown RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 HARSP12081 509 aaKnown RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 SYN1P17600 705 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 DDIT3P35638 169 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 DAG1Q14118 895 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 FAM180AQ6UWF9 173 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 PDZD4Q76G19 769 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 SPPL2CQ8IUH8 684 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 GLB1L2Q8IW92 636 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 TMTC2Q8N394 836 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 BRI3BPQ8WY22 251 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 PEX11GQ96HA9 241 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 PTPN18Q99952 460 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 INO80BQ9C086 356 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 PGAP2Q9UHJ9 254 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 ADAMTS8Q9UP79 889 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 LRRFIP2Q9Y608 721 aaKnown RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 FAM171A2A8MVW0 826 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 AKR1B10O60218 316 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 MPIG6BO95866 241 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 FUT4P22083 530 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 GPR15P49685 360 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 SUMO3P55854 103 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-212ENST00000493341 NKX6-1P78426 367 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-212ENST00000493341 PRKCQQ04759 706 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 CHRNEQ04844 493 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 MGAT5Q09328 741 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 SEPT2Q15019 361 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 CPSF6Q16630 551 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS13A-212ENST00000493341 KHDC1Q4VXA5 237 aaKnown RBP5.56□□□□□ -1.52
VPS13A-212ENST00000493341 WDR48Q8TAF3 677 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 TTLL2Q9BWV7 592 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 PCDHA6Q9UN73 950 aa5.56□□□□□ -1.52
VPS13A-212ENST00000493341 NOTOA8MTQ0 251 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 F8W031 263 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 NRP2O60462 931 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 SKAP2O75563 359 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 RHOBTB3O94955 611 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 EFEMP2O95967 443 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 PDIA3P30101 505 aaKnown RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 HSPA7P48741 367 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 NRG3P56975 720 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 MZT2AQ6P582 158 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 RSPH3Q86UC2 560 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 SESTD1Q86VW0 696 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 IL17REQ8NFR9 667 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 FDXACB1Q9BRP7 624 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 PITHD1Q9GZP4 211 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 PNPOQ9NVS9 261 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 PIM2Q9P1W9 311 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 RBPJLQ9UBG7 517 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 NRBP1Q9UHY1 535 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 ISM1B1AKI9 464 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 PSPNO60542 156 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 PAPLNO95428 1278 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 APEX1P27695 318 aaKnown RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 ADSLP30566 484 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 THBS2P35442 1172 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 ARL4AP40617 200 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 GALK1P51570 392 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 PFKPQ01813 784 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 ZP2Q05996 745 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 TBX2Q13207 712 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 CCDC178Q5BJE1 867 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 RSRC2Q7L4I2 434 aaKnown RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 RNF152Q8N8N0 203 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 ATG16L2Q8NAA4 619 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 GPR156Q8NFN8 814 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 TOE1Q96GM8 510 aaKnown RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 ITM2CQ9NQX7 267 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 GJB4Q9NTQ9 266 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 GALNT8Q9NY28 637 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 DTLQ9NZJ0 730 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 KCMF1Q9P0J7 381 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-212ENST00000493341 LRFN1Q9P244 771 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 GRHPRQ9UBQ7 328 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 MAGEL2Q9UJ55 1249 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 VAV3Q9UKW4 847 aa5.55□□□□□ -1.52
VPS13A-212ENST00000493341 A0A0A6YYJ9 748 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 MYO1FO00160 1098 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 IGLV1-40P01703 118 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 LRG1P02750 347 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 DBHP09172 617 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 DHRS4L1P0CG22 281 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 TYRP14679 529 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 FOSL1P15407 271 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 CDC42EP1Q00587 391 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 BNIP3Q12983 259 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 MPEG1Q2M385 716 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms