RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	DRC7	Q8IY82	874 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	TMEM130	Q8N3G9	435 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	GUF1	Q8N442	669 aa	Known RBP	6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	PRPF38A	Q8NAV1	312 aa	Known RBP	6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	NLGN2	Q8NFZ4	835 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	CLEC4D	Q8WXI8	215 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	SLC5A5	Q92911	643 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	DNAJC19	Q96DA6	116 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	ZNF830	Q96NB3	372 aa	Predicted RBP	6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	SLF1	Q9BQI6	1058 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	POLR3C	Q9BUI4	534 aa	Predicted RBP	6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	SSBP4	Q9BWG4	385 aa	Predicted RBP	6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	GLIS2	Q9BZE0	524 aa	Predicted RBP	6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	BLZF1	Q9H2G9	400 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	EHMT1	Q9H9B1	1298 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	SLC38A10	Q9HBR0	1119 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	METTL5	Q9NRN9	209 aa	Known RBP	6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	SAMSN1	Q9NSI8	373 aa	Known RBP	6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	HACL1	Q9UJ83	578 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	PCDHA12	Q9UN75	941 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	ADAMTS5	Q9UNA0	930 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	MYPN	Q86TC9	1320 aa		6.17	□□□□□ -1.42
ATG4A-208	ENST00000489247	SSC5D	A1L4H1	1573 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247		A0A1W2PQC6	194 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	BICDL2	A1A5D9	508 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	MYMK	A6NI61	221 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	FAM86B1	E9PN63	330 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	MEIS1	O00470	390 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	PSMA7	O14818	248 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	MSH4	O15457	936 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	FBXO24	O75426	580 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	PSMD10	O75832	226 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	ECEL1	O95672	775 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	TUBB4A	P04350	444 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	CTSB	P07858	339 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	FAM86B2	P0C5J1	330 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	SFPQ	P23246	707 aa	Known RBP eCLIP	6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	ARL4D	P49703	201 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	BACE1	P56817	501 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	SET	Q01105	290 aa	Predicted RBP	6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	LRRC63	Q05C16	580 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	PPP2R5C	Q13362	524 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	TRIM14	Q14142	442 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	TCP11X2	Q5H9J9	407 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	MIGA2	Q7L4E1	593 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	TMC6	Q7Z403	805 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	KCNK18	Q7Z418	384 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	LDHD	Q86WU2	507 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	MCF2L2	Q86YR7	1114 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	TMEM139	Q8IV31	216 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	ZC3H3	Q8IXZ2	948 aa	Known RBP	6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	SMYD4	Q8IYR2	804 aa	Predicted RBP	6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	SCYL3	Q8IZE3	742 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	SPICE1	Q8N0Z3	855 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	KIAA0895	Q8NCT3	520 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	REPS2	Q8NFH8	660 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	RASSF8	Q8NHQ8	419 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	NELFB	Q8WX92	580 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	STAM	Q92783	540 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	P2RX5	Q93086	422 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	CCDC51	Q96ER9	411 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	PANX2	Q96RD6	677 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	TRIM56	Q9BRZ2	755 aa	Known RBP	6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	NRSN2	Q9GZP1	204 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	SOX17	Q9H6I2	414 aa	Predicted RBP	6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	AS3MT	Q9HBK9	375 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	SPON1	Q9HCB6	807 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	EXOC1	Q9NV70	894 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	PPP1R9A	Q9ULJ8	1098 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	CTNND2	Q9UQB3	1225 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	PCDHA2	Q9Y5H9	948 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	MYH4	Q9Y623	1939 aa		6.16	□□□□□ -1.42
ATG4A-208	ENST00000489247	LOC100289279	A0A1B0GTE1	492 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	LGALS16	A8MUM7	142 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	C19orf81	C9J6K1	198 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	KIF2A	O00139	706 aa	Predicted RBP	6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	ARHGAP6	O43182	974 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	NRDC	O43847	1150 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	STX10	O60499	249 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	B3GALT4	O96024	378 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	SKIL	P12757	684 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	VCAM1	P19320	739 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	GTF2F1	P35269	517 aa	Known RBP eCLIP	6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	COPB1	P53618	953 aa	Known RBP	6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	SLC12A3	P55017	1021 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	ASIC1	P78348	528 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	STK4	Q13043	487 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	IK	Q13123	557 aa	Predicted RBP	6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	KRT31	Q15323	416 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	USH1G	Q495M9	461 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	FILIP1L	Q4L180	1135 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	ZCWPW2	Q504Y3	356 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	CEP55	Q53EZ4	464 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	ZNF394	Q53GI3	561 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	NBPF12	Q5TAG4	269 aa	Predicted RBP	6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	XRRA1	Q6P2D8	792 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	ARHGAP27	Q6ZUM4	889 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	OTOP1	Q7RTM1	612 aa		6.15	□□□□□ -1.42
ATG4A-208	ENST00000489247	KRT26	Q7Z3Y9	468 aa		6.15	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms