RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 ROBO3Q96MS0 1386 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 WDR46O15213 610 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 PPFIA2O75334 1257 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 CYP2D6P10635 497 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 PDHBP11177 359 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 DSG3P32926 999 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 POLR2FP61218 127 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 PPP2R5EQ16537 467 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 KIAA1755Q5JYT7 1200 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 C12orf60Q5U649 245 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 CEP57Q86XR8 500 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 ZC3H3Q8IXZ2 948 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 MAB21L3Q8N8X9 362 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 SLC44A5Q8NCS7 719 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 OR2W6PQ8NHA6 318 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 CCHCR1Q8TD31 782 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 XPO6Q96QU8 1125 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 TXLNGYQ9BZA5 131 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 FAM129AQ9BZQ8 928 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 UBE2OQ9C0C9 1292 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 NEUROG2Q9H2A3 272 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 GANQ9H2C0 597 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 ADAMTS1Q9UHI8 967 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 TTC7AQ9ULT0 858 aaPredicted RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 ADAMTS5Q9UNA0 930 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 PACSIN2Q9UNF0 486 aaPredicted RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 RANBP2P49792 3224 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 PLXNA1Q9UIW2 1896 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 A0A0A6YYK5 440 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-205ENST00000469550 CCDC189A1A4V9 331 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 SMCO2A6NFE2 343 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 CFAP73A6NFT4 308 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 F8VZ95 297 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 MPHOSPH10O00566 681 aaKnown RBP10.36□□□□□ -0.75
HDAC3-205ENST00000469550 CEP104O60308 925 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 AKR1B1P15121 316 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 ADORA2AP29274 412 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 NAPAP54920 295 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 NPEPPSP55786 919 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 MAGOHP61326 146 aaKnown RBP10.36□□□□□ -0.75
HDAC3-205ENST00000469550 ELF3P78545 371 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-205ENST00000469550 SLMAPQ14BN4 828 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 TMEM266Q2M3C6 531 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 TMEM119Q4V9L6 283 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 WDR78Q5VTH9 848 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 C16orf86Q6ZW13 317 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 HOOK3Q86VS8 718 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 FMNL3Q8IVF7 1028 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 ANKS4BQ8N8V4 417 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 CCDC197Q8NCU1 140 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 UBLCP1Q8WVY7 318 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-205ENST00000469550 MAGOHBQ96A72 148 aaKnown RBP10.36□□□□□ -0.75
HDAC3-205ENST00000469550 CDK5RAP3Q96JB5 506 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.36□□□□□ -0.75
HDAC3-205ENST00000469550 BATF3Q9NR55 127 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 SUCLA2Q9P2R7 463 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-205ENST00000469550 INTUQ9ULD6 942 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 STXBP5LQ9Y2K9 1186 aa10.36□□□□□ -0.75
HDAC3-205ENST00000469550 RTN2O75298 545 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 ATP6V1G2O95670 118 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 NUDT17P0C025 328 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 PRKCIP41743 596 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 DNA2P51530 1060 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 RNASE9P60153 205 aaKnown RBP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 ICA1Q05084 483 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 RAPGEF1Q13905 1077 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 SNX17Q15036 470 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 IRF2BP2Q7Z5L9 587 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 PIGWQ7Z7B1 504 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 CROCCP2Q86T23 111 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 SYCE1Q8N0S2 351 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 METTL13Q8N6R0 699 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 DDX12PQ92771 950 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 CUL5Q93034 780 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 DYNLL2Q96FJ2 89 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 PGM2Q96G03 612 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 SCLT1Q96NL6 688 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 ZNF317Q96PQ6 595 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 PACSIN1Q9BY11 444 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 CCDC134Q9H6E4 229 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 EBF2Q9HAK2 575 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 SLC5A4Q9NY91 659 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 BCCIPQ9P287 314 aaKnown RBP eCLIP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 NENFQ9UMX5 172 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 SLC12A4Q9UP95 1085 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 DIS3Q9Y2L1 958 aaKnown RBP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 hCG_1984214I3L0E3 225 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 KRIT1O00522 736 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 SEPT4O43236 478 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 SLC25A27O95847 323 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 SCP2P22307 547 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 TXKP42681 527 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 CDK8P49336 464 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 POU5F1Q01860 360 aaKnown RBP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 CALCRLQ16602 461 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 KRT71Q3SY84 523 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 FAM109BQ6ICB4 259 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 PPP4R3CPQ6ZMV5 832 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 DYMQ7RTS9 669 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms