RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 JAM3Q9BX67 310 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 FTOQ9C0B1 505 aaKnown RBP eCLIP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 KCTD10Q9H3F6 313 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TAF1DQ9H5J8 278 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SYNCQ9H7C4 482 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 ABCF3Q9NUQ8 709 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 MKL2Q9ULH7 1088 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 MAFFQ9ULX9 164 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 MAN2B2Q9Y2E5 1009 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TRBV23OR9-2A0A075B6M9 112 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TRIM64CA6NLI5 447 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 H7C0S8 307 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 SLU7O95391 586 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CTSBP07858 339 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 HSPA1AP0DMV8 641 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 HSPA1BP0DMV9 641 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 FGFR3P22607 806 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ADH7P40394 386 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PAFAH1B1P43034 410 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 AARSP49588 968 aaKnown RBP eCLIP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CCR9P51686 369 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 RPL11P62913 178 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MRPS9P82933 396 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GALNT1Q10472 559 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 LSAMPQ13449 338 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 NR0B2Q15466 257 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 FAM110CQ1W6H9 321 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GPR139Q6DWJ6 353 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 FOXR1Q6PIV2 292 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MFSD6Q6ZSS7 791 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CATSPER4Q7RTX7 472 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MOGAT3Q86VF5 341 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CXorf67Q86X51 503 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 NME9Q86XW9 330 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CCAR2Q8N163 923 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 NUP93Q8N1F7 819 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PLD6Q8N2A8 252 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ZSCAN18Q8TBC5 510 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ADAMTS18Q8TE60 1221 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ST8SIA4Q92187 359 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 N4BP2L2Q92802 583 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 KLHDC7BQ96G42 594 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PRPF18Q99633 342 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 C7orf25Q9BPX7 421 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 KRTAP4-8Q9BYQ9 185 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 STK33Q9BYT3 514 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PAIP1Q9H074 479 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 DHX36Q9H2U1 1008 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 POFUT1Q9H488 388 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ZMAT4Q9H898 229 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CYP4F12Q9HCS2 524 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 KCNH3Q9ULD8 1083 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ATXN7L1Q9ULK2 861 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 hCG_1807616A0A1W2PRN6 198 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PSMA7O14818 248 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 AURKAO14965 403 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 FRS3O43559 492 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 USO1O60763 962 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TSPAN9O75954 239 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ITGA2BP08514 1039 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GSTM1P09488 218 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 THEGLP0DJG4 465 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 KRT10P13645 584 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GSPT1P15170 499 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CYP7A1P22680 504 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MSH2P43246 934 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 KCNJ5P48544 419 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 USP11P51784 963 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GPR19Q15760 415 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MUM1Q2TAK8 710 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC44A4Q53GD3 710 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CC2D1BQ5T0F9 858 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MRPL14Q6P1L8 145 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 LETMD1Q6P1Q0 360 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 RNF44Q7L0R7 432 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 OTOP1Q7RTM1 612 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TTC7BQ86TV6 843 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 NOSTRINQ8IVI9 506 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 RHOT1Q8IXI2 618 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ADGRG2Q8IZP9 1017 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 C17orf53Q8N3J3 647 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PRR18Q8N4B5 295 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MFSD2AQ8NA29 543 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TBC1D5Q92609 795 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 DPF2Q92785 391 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 WNT8BQ93098 351 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 RILPL2Q969X0 211 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 C18orf8Q96DM3 657 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TUBGCP5Q96RT8 1024 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TXLNGYQ9BZA5 131 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC177Q9NQR7 707 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 SYNPO2Q9UMS6 1093 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PCDHGB4Q9UN71 923 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 LIMCH1Q9UPQ0 1083 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PCDHA13Q9Y5I0 950 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PRAMEF25A6NGN4 478 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GTPBP1O00178 669 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 HTRA2O43464 458 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TGDSO95455 350 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 BMP4P12644 408 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms