RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 KLRC3Q07444 240 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 TXNRD1Q16881 649 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 QRICH1Q2TAL8 776 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 FAM117BQ6P1L5 589 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 ZC3H18Q86VM9 953 aaKnown RBP16.34■□□□□ 0.21
PTPRF-206ENST00000429895 SPATA2LQ8IUW3 424 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-206ENST00000429895 ZBED8Q8IZ13 594 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 ABHD10Q9NUJ1 306 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 ANKARQ7Z5J8 1434 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 HMGCS2P54868 508 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 ZNF513Q8N8E2 541 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-206ENST00000429895 MAP3K20Q9NYL2 800 aaKnown RBP16.34■□□□□ 0.21
PTPRF-206ENST00000429895 NARFQ9UHQ1 456 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 UGGT1Q9NYU2 1555 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 BCAR1P56945 870 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 PSMC5P62195 406 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 GPD1LQ8N335 351 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 KLHL11Q9NVR0 708 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 CHCHD3Q9NX63 227 aaKnown RBP16.34■□□□□ 0.21
PTPRF-206ENST00000429895 AIPL1Q9NZN9 384 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 KCNH4Q9UQ05 1017 aa16.34■□□□□ 0.21
PTPRF-206ENST00000429895 TRIM49P0CI25 452 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 TRIM49CP0CI26 452 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 RAD51Q06609 339 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 C1orf146Q5VVC0 180 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 EPAS1Q99814 870 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 EIF2AK1Q9BQI3 630 aaKnown RBP16.33■□□□□ 0.21
PTPRF-206ENST00000429895 ROBO2Q9HCK4 1378 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 ATP8B1O43520 1251 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 AARSP49588 968 aaKnown RBP eCLIP16.33■□□□□ 0.21
PTPRF-206ENST00000429895 SULT1E1P49888 294 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 NECTIN1Q15223 517 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 EPHA10Q5JZY3 1008 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 ITPRIPL1Q6GPH6 555 aa16.33■□□□□ 0.21
PTPRF-206ENST00000429895 RPAINQ86UA6 219 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 FAM20AQ96MK3 541 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 ZCWPW1Q9H0M4 648 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 DCP1AQ9NPI6 582 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-206ENST00000429895 SENP1Q9P0U3 644 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 NPHP3-ACAD11A0A0J9YXS1 232 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 MIF4GDA9UHW6 222 aaKnown RBP16.33■□□□□ 0.2
PTPRF-206ENST00000429895 CCDC188H7C350 402 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 BEND6Q5SZJ8 279 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-206ENST00000429895 PODNQ7Z5L7 613 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 GLYCTKQ8IVS8 523 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 TDP2O95551 362 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 KRT14P02533 472 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 HOXA7P31268 230 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-206ENST00000429895 PMS2P54278 862 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 RNF149Q8NC42 400 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 KIFC3Q9BVG8 833 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 TRIM54Q9BYV2 358 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 TMEM60Q9H2L4 133 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 AGO2Q9UKV8 859 aaKnown RBP16.33■□□□□ 0.2
PTPRF-206ENST00000429895 TRIM33Q9UPN9 1127 aa16.33■□□□□ 0.2
PTPRF-206ENST00000429895 C1orf54Q8WWF1 131 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 ZFYVE19Q96K21 471 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 TMEM106CQ9BVX2 250 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 LGALS16A8MUM7 142 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 CDH6P55285 790 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 PDCLQ13371 301 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 MTMR2Q13614 643 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 GRM4Q14833 912 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 CCDC85BQ15834 202 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 DCUN1D1Q96GG9 259 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 CYP4F11Q9HBI6 524 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 CPDO75976 1380 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 RPAP1Q9BWH6 1393 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 EN1Q05925 392 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 AP1ARQ63HQ0 302 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 ST13P4Q8IZP2 240 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 TXNP10599 105 aaKnown RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 CHRNA3P32297 505 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 NFRKBQ6P4R8 1299 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 RFX8Q6ZV50 586 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 PID1Q7Z2X4 250 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 CDKL3Q8IVW4 592 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 ABHD8Q96I13 439 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 ASPSCR1Q9BZE9 553 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 SEL1LQ9UBV2 794 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 ADCK2Q7Z695 626 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 CATSPER3Q86XQ3 398 aa16.32■□□□□ 0.2
PTPRF-206ENST00000429895 ACTR5Q9H9F9 607 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 CDV3Q9UKY7 258 aaKnown RBP16.32■□□□□ 0.2
PTPRF-206ENST00000429895 RRM2BQ7LG56 351 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 GOLPH3LQ9H4A5 285 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 PLEKHA5Q9HAU0 1116 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 EMSYQ7Z589 1322 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 RNF103-CHMP3A0A140T963 221 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 CCDC78A2IDD5 438 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 KCNJ6P48051 423 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 TMEM62Q0P6H9 643 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 CUL4AQ13619 759 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 TOB2Q14106 344 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-206ENST00000429895 SYTL3Q4VX76 610 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 COBLL1Q53SF7 1204 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 USP33Q8TEY7 942 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 SNX5Q9Y5X3 404 aa16.31■□□□□ 0.2
PTPRF-206ENST00000429895 APOL1O14791 398 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms