RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GDF6Q6KF10 455 aaPredicted RBP18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 TMC6Q7Z403 805 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 IFNLR1Q8IU57 520 aaPredicted RBP18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 PDLIM2Q96JY6 352 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 TCHPQ9BT92 498 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 TARS2Q9BW92 718 aaKnown RBP18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 RTN4Q9NQC3 1192 aaKnown RBP18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 PAK6Q9NQU5 681 aaPredicted RBP18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 DMAC2Q9NW81 257 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 A0A0U1RQG5 324 aaPredicted RBP18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 A0A1W2PQ45 241 aaPredicted RBP18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 A0A1W2PQY0 241 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 LRRC10BA6NIK2 292 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 DNM1LO00429 736 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 ACKR2O00590 384 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 CASP4P49662 377 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 MTFR1Q15390 333 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 PTGISQ16647 500 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 VWA3BQ502W6 1294 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 APTXQ7Z2E3 356 aaKnown RBP18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 USP37Q86T82 979 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 GPD1LQ8N335 351 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 TRIM44Q96DX7 344 aaPredicted RBP18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 PRIMPOLQ96LW4 560 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 PCMTD1Q96MG8 357 aaPredicted RBP18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 MSTO1Q9BUK6 570 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 IFT122Q9HBG6 1241 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 KIAA1586Q9HCI6 787 aa18.69■□□□□ 0.58
CCDC28B-202ENST00000421922 CLDN3O15551 220 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 TOM1L1O75674 476 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 LDHAP00338 332 aaKnown RBP18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 HARSP12081 509 aaKnown RBP18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 HIC1Q14526 733 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 NR1I3Q14994 352 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 ATF7IP2Q5U623 682 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 INTS8Q75QN2 995 aaKnown RBP18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 APBB1IPQ7Z5R6 666 aaPredicted RBP18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 TRIM59Q8IWR1 403 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 RDH13Q8NBN7 331 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 TMEM174Q8WUU8 243 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 SAAL1Q96ER3 474 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 NDST4Q9H3R1 872 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 FZD8Q9H461 694 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 AGO2Q9UKV8 859 aaKnown RBP18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 PHF24Q9UPV7 400 aa18.68■□□□□ 0.58
CCDC28B-202ENST00000421922 GOLGA8IPA6NC78 632 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 GOLGA8JA6NMD2 632 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 MAPK13O15264 365 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 TPM1P09493 284 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 SFPQP23246 707 aaKnown RBP eCLIP18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 FAM187BQ17R55 369 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 ZNF568Q3ZCX4 644 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 PRPF38BQ5VTL8 546 aaKnown RBP18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 SLC39A4Q6P5W5 647 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 CATSPER4Q7RTX7 472 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 VSTM4Q8IW00 320 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 OSMRQ99650 979 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 ACO2Q99798 780 aaKnown RBP18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 SEZ6LQ9BYH1 1024 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 CNTNAP2Q9UHC6 1331 aa18.67■□□□□ 0.58
CCDC28B-202ENST00000421922 EXTL3O43909 919 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 CRYBB1P53674 252 aaPredicted RBP18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 MRPS6P82932 125 aaKnown RBP18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 NOLC1Q14978 699 aaKnown RBP eCLIP18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 PCBP1Q15365 356 aaKnown RBP eCLIP18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 SNRNP35Q16560 246 aaKnown RBP18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 SPECC1LQ69YQ0 1117 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 MPZL3Q6UWV2 235 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 TSHZ1Q6ZSZ6 1077 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 ZBTB33Q86T24 672 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 SERINC5Q86VE9 423 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 ADPGKQ9BRR6 497 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 ADAMTS10Q9H324 1103 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 MINDY3Q9H8M7 445 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 USP20Q9Y2K6 914 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 TRPV2Q9Y5S1 764 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 STYXL1Q9Y6J8 313 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 ZNF233A6NK53 670 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 TEX33O43247 280 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 GPR32O75388 356 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 AFPP02771 609 aaKnown RBP18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 ADSSP30520 456 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 BFSP1Q12934 665 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 FAM213AQ9BRX8 229 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 INTS13Q9NVM9 706 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 IMPACTQ9P2X3 320 aa18.66■□□□□ 0.58
CCDC28B-202ENST00000421922 STX10O60499 249 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 TFRCP02786 760 aaKnown RBP18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 EDN1P05305 212 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 DARSP14868 501 aaKnown RBP18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 EIF4BP23588 611 aaKnown RBP18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 THPOP40225 353 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 KCNH2Q12809 1159 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 PTK7Q13308 1070 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 MIIPQ5JXC2 388 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 PPFIBP1Q86W92 1011 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 ZNF333Q96JL9 665 aa18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 ZBTB45Q96K62 511 aaPredicted RBP18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 CELF4Q9BZC1 486 aaKnown RBP18.65■□□□□ 0.58
CCDC28B-202ENST00000421922 OGDHLQ9ULD0 1010 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms