RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 IDEP14735 1019 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 ATF7P17544 494 aaPredicted RBP16.08■□□□□ 0.16
LIMS1-206ENST00000414829 LAG3P18627 525 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 PPM1AP35813 382 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 CACNB1Q02641 598 aaPredicted RBP16.08■□□□□ 0.16
LIMS1-206ENST00000414829 KYAT1Q16773 422 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 HAUS6Q7Z4H7 955 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 FSIP1Q8NA03 581 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 BICD1Q96G01 975 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 CPB2Q96IY4 423 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 TRIM9Q9C026 710 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 PDZD7Q9H5P4 517 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 RSAD1Q9HA92 442 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 MTMR10Q9NXD2 777 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 EXOC7Q9UPT5 735 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 HPSEQ9Y251 543 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 GIT1Q9Y2X7 761 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 IPPQ9Y573 584 aa16.08■□□□□ 0.16
LIMS1-206ENST00000414829 TTC3P53804 2025 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 FRMD3A2A2Y4 597 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 C5orf67F2Z3F1 127 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 HNRNPDLO14979 420 aaKnown RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 GTPBP6O43824 516 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 TOM1L1O75674 476 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 CTNNB1P35222 781 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 ASIC1P78348 528 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 ZNF568Q3ZCX4 644 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 PAN2Q504Q3 1202 aaKnown RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 HERC4Q5GLZ8 1057 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 NOMO2Q5JPE7 1267 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 UBXN11Q5T124 520 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 SPOUT1Q5T280 376 aaKnown RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 KANK3Q6NY19 840 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 FBXO22Q8NEZ5 403 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 ARNTL2Q8WYA1 636 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 CCDC47Q96A33 483 aaKnown RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 DNAJC19Q96DA6 116 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 IPO9Q96P70 1041 aaKnown RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 MRPL44Q9H9J2 332 aaKnown RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 TOPORSQ9NS56 1045 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 PANK4Q9NVE7 773 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 PCDHB13Q9Y5F0 798 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 PCDHB12Q9Y5F1 795 aa16.07■□□□□ 0.16
LIMS1-206ENST00000414829 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 LAMA2P24043 3122 aaKnown RBP16.07■□□□□ 0.16
LIMS1-206ENST00000414829 NPTXRO95502 500 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 MCF2P10911 925 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 LIG4P49917 911 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 PTPROQ16827 1216 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 CLLU1OSQ5K130 101 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 MPZL3Q6UWV2 235 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 SFR1Q86XK3 245 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 MAP4K3Q8IVH8 894 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 TMEM192Q8IY95 271 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 P2RX5Q93086 422 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 RPS6KC1Q96S38 1066 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 ACO2Q99798 780 aaKnown RBP16.06■□□□□ 0.16
LIMS1-206ENST00000414829 C7orf25Q9BPX7 421 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 TCHPQ9BT92 498 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 CCDC94Q9BW85 323 aaPredicted RBP16.06■□□□□ 0.16
LIMS1-206ENST00000414829 GDPD2Q9HCC8 539 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 POLD4Q9HCU8 107 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 STK39Q9UEW8 545 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 HOOK1Q9UJC3 728 aaKnown RBP16.06■□□□□ 0.16
LIMS1-206ENST00000414829 TBX20Q9UMR3 447 aa16.06■□□□□ 0.16
LIMS1-206ENST00000414829 MRPL42Q9Y6G3 142 aaKnown RBP16.06■□□□□ 0.16
LIMS1-206ENST00000414829 A0A1B0GVL5 298 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 PVALEFA0A1B0GWK0 134 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 INPPL1O15357 1258 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 CLDN3O15551 220 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 PIGRP01833 764 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 BMPR1AP36894 532 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 YARSP54577 528 aaKnown RBP16.05■□□□□ 0.16
LIMS1-206ENST00000414829 GTF2BQ00403 316 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 RNASELQ05823 741 aaKnown RBP16.05■□□□□ 0.16
LIMS1-206ENST00000414829 HSP90AA2PQ14568 343 aaPredicted RBP16.05■□□□□ 0.16
LIMS1-206ENST00000414829 GRIN2CQ14957 1233 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 NOLC1Q14978 699 aaKnown RBP eCLIP16.05■□□□□ 0.16
LIMS1-206ENST00000414829 EPC2Q52LR7 807 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 Q7L0L9 218 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 HELQQ8TDG4 1101 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 FAM161BQ96MY7 647 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 CASD1Q96PB1 797 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 EIF2AQ9BY44 585 aaKnown RBP16.05■□□□□ 0.16
LIMS1-206ENST00000414829 LMAN2LQ9H0V9 348 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 NXF3Q9H4D5 531 aaKnown RBP16.05■□□□□ 0.16
LIMS1-206ENST00000414829 LMCD1Q9NZU5 365 aa16.05■□□□□ 0.16
LIMS1-206ENST00000414829 UBE4BO95155 1302 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 ACTN4O43707 911 aaKnown RBP16.04■□□□□ 0.16
LIMS1-206ENST00000414829 NR1I2O75469 434 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 GCNT3O95395 438 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 FOSL2P15408 326 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 ALDH7A1P49419 539 aaKnown RBP16.04■□□□□ 0.16
LIMS1-206ENST00000414829 NDUFA8P51970 172 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 COASYQ13057 564 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 NT5DC1Q5TFE4 455 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 SLFN12LQ6IEE8 588 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 AGMOQ6ZNB7 445 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 UNC13DQ70J99 1090 aa16.04■□□□□ 0.16
LIMS1-206ENST00000414829 TAS1R3Q7RTX0 852 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms