RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	SLC39A2	Q9NP94	309 aa		14.44	□□□□□ -0.1
SF1-206	ENST00000413725	PCDHA5	Q9Y5H7	936 aa		14.44	□□□□□ -0.1
SF1-206	ENST00000413725	SLC4A7	Q9Y6M7	1214 aa		14.44	□□□□□ -0.1
SF1-206	ENST00000413725		A0A1B0GUA9	196 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	14.43	□□□□□ -0.1
SF1-206	ENST00000413725	HNRNPDL	O14979	420 aa	Known RBP	14.43	□□□□□ -0.1
SF1-206	ENST00000413725	SARS	P49591	514 aa	Known RBP	14.43	□□□□□ -0.1
SF1-206	ENST00000413725	CASP5	P51878	434 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	C1QBP	Q07021	282 aa	Known RBP	14.43	□□□□□ -0.1
SF1-206	ENST00000413725	CAMK4	Q16566	473 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	DCAF4L1	Q3SXM0	396 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	NT5DC1	Q5TFE4	455 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	SLC27A1	Q6PCB7	646 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	RTN4RL1	Q86UN2	441 aa	Predicted RBP	14.43	□□□□□ -0.1
SF1-206	ENST00000413725	TDH	Q8IZJ6	230 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	MYOCD	Q8IZQ8	938 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	SYCP3	Q8IZU3	236 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	SPATA20	Q8TB22	786 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	LINC01599	Q8WXQ3	324 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	ERCC4	Q92889	916 aa	Predicted RBP	14.43	□□□□□ -0.1
SF1-206	ENST00000413725	SLC9A7	Q96T83	725 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	ACO2	Q99798	780 aa	Known RBP	14.43	□□□□□ -0.1
SF1-206	ENST00000413725	TARS2	Q9BW92	718 aa	Known RBP	14.43	□□□□□ -0.1
SF1-206	ENST00000413725	TRAIP	Q9BWF2	469 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	STRA6	Q9BX79	667 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	PDZD7	Q9H5P4	517 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	TMEM206	Q9H813	350 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	FAM105A	Q9NUU6	356 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	LRFN2	Q9ULH4	789 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725	TNFSF13B	Q9Y275	285 aa		14.43	□□□□□ -0.1
SF1-206	ENST00000413725		A0A0U1RQF3	1178 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	TTLL13P	A6NNM8	815 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725		C9IYK1	514 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	TOM1L1	O75674	476 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	PRPF6	O94906	941 aa	Known RBP	14.42	□□□□□ -0.1
SF1-206	ENST00000413725	KIF20A	O95235	890 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	PIGR	P01833	764 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	EDN1	P05305	212 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	STAG3L1	P0CL83	205 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	IBSP	P21815	317 aa	Predicted RBP	14.42	□□□□□ -0.1
SF1-206	ENST00000413725	MATR3	P43243	847 aa	Known RBP eCLIP	14.42	□□□□□ -0.1
SF1-206	ENST00000413725	ZNF568	Q3ZCX4	644 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	RASIP1	Q5U651	963 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	MPZL3	Q6UWV2	235 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	14.42	□□□□□ -0.1
SF1-206	ENST00000413725	EPM2AIP1	Q7L775	607 aa	Predicted RBP	14.42	□□□□□ -0.1
SF1-206	ENST00000413725	NPAS4	Q8IUM7	802 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	HACE1	Q8IYU2	909 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	PHOSPHO2	Q8TCD6	241 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	TCHP	Q9BT92	498 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	FGFBP2	Q9BYJ0	223 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	CXXC1	Q9P0U4	656 aa	Predicted RBP	14.42	□□□□□ -0.1
SF1-206	ENST00000413725	USP20	Q9Y2K6	914 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	PCDHB7	Q9Y5E2	793 aa		14.42	□□□□□ -0.1
SF1-206	ENST00000413725	KIAA1671	Q9BY89	1806 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	RANBP2	P49792	3224 aa	Known RBP	14.41	□□□□□ -0.1
SF1-206	ENST00000413725		A0A1W2PPC1	479 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	RBAK-RBAKDN	I3L0D1	243 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	NPTXR	O95502	500 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	EOMES	O95936	686 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	DEFB103A	P81534	67 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	STK4	Q13043	487 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	NOLC1	Q14978	699 aa	Known RBP eCLIP	14.41	□□□□□ -0.1
SF1-206	ENST00000413725	BMT2	Q1RMZ1	405 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	ZNF658	Q5TYW1	1059 aa	Predicted RBP	14.41	□□□□□ -0.1
SF1-206	ENST00000413725	SLFN12L	Q6IEE8	588 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	CDR2L	Q86X02	465 aa	Predicted RBP	14.41	□□□□□ -0.1
SF1-206	ENST00000413725	ECHDC2	Q86YB7	292 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	KIAA0895	Q8NCT3	520 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	GLIS3	Q8NEA6	775 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	ZNF507	Q8TCN5	953 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	SCFD1	Q8WVM8	642 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	SYAP1	Q96A49	352 aa	Predicted RBP	14.41	□□□□□ -0.1
SF1-206	ENST00000413725	PGBD4	Q96DM1	585 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	PRO3102	Q9H379	93 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	ELAC1	Q9H777	363 aa	Known RBP	14.41	□□□□□ -0.1
SF1-206	ENST00000413725	TMEM161A	Q9NX61	479 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	KIAA1468	Q9P260	1216 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	ANKFY1	Q9P2R3	1169 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	MAN1B1	Q9UKM7	699 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	PCDHB2	Q9Y5E7	798 aa		14.41	□□□□□ -0.1
SF1-206	ENST00000413725	CLDN3	O15551	220 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	ZNF623	O75123	536 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	UPP2	O95045	317 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	ATP2A2	P16615	1042 aa	Known RBP	14.4	□□□□□ -0.1
SF1-206	ENST00000413725	PROZ	P22891	400 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	FAM189B	P81408	668 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	KCNA1	Q09470	495 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	UBXN11	Q5T124	520 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	CCDC183	Q5T5S1	534 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	EEF1DP3	Q658K8	133 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	TRIML1	Q8N9V2	468 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	RNF169	Q8NCN4	708 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	TOP1MT	Q969P6	601 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	EIF2A	Q9BY44	585 aa	Known RBP	14.4	□□□□□ -0.1
SF1-206	ENST00000413725	GBP3	Q9H0R5	595 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	GDA	Q9Y2T3	454 aa		14.4	□□□□□ -0.1
SF1-206	ENST00000413725	HOXA2	O43364	376 aa		14.39	□□□□□ -0.11
SF1-206	ENST00000413725	MCF2	P10911	925 aa		14.39	□□□□□ -0.11
SF1-206	ENST00000413725	HARS	P12081	509 aa	Known RBP	14.39	□□□□□ -0.11

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms