RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PCDHGA7Q9Y5G6 932 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PCDHGA6Q9Y5G7 932 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PCDHGA3Q9Y5H0 932 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PCDHGA2Q9Y5H1 932 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 WASHC2AQ641Q2 1341 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 RASA4BC9J798 803 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 RASA4O43374 803 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 AP1G1O43747 822 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 KRTAP5-9P26371 169 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PPP2CBP62714 309 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PPP2CAP67775 309 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 VASNQ6EMK4 673 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PGM2L1Q6PCE3 622 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 NXPE1Q8N323 547 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 CLRN3Q8NCR9 226 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 NSUN6Q8TEA1 469 aaKnown RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 MAGEB10Q96LZ2 347 aaPredicted RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 YTHDC1Q96MU7 727 aaKnown RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 MYLK2Q9H1R3 596 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 DEF6Q9H4E7 631 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 GPR27Q9NS67 375 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 SMC4Q9NTJ3 1288 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 C14orf119Q9NWQ9 140 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 MRFAP1Q9Y605 127 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 SLC4A7Q9Y6M7 1214 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 CBX4O00257 560 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 ULK1O75385 1050 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 MYBP10242 640 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 LCP1P13796 627 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 TNFRSF1AP19438 455 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 IL6STP40189 918 aaPredicted RBP4.85□□□□□ -1.63
HMGB1-204ENST00000399489 LSSP48449 732 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 MPP1Q00013 466 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 TAF11Q15544 211 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 ABHD17CQ6PCB6 329 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 RSPO2Q6UXX9 243 aaPredicted RBP4.85□□□□□ -1.63
HMGB1-204ENST00000399489 USP51Q70EK9 711 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 LIMS2Q7Z4I7 341 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 ZBTB34Q8NCN2 500 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 FAM156AQ8NDB6 213 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 FAM193BQ96PV7 902 aaPredicted RBP4.85□□□□□ -1.63
HMGB1-204ENST00000399489 FAM204AQ9H8W3 233 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 SMYD2Q9NRG4 433 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 BLOC1S4Q9NUP1 217 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.85□□□□□ -1.63
HMGB1-204ENST00000399489 ST6GALNAC2Q9UJ37 374 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 ZDHHC9Q9Y397 364 aa4.85□□□□□ -1.63
HMGB1-204ENST00000399489 BLACEA4D250 179 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 TRIM75PA6NK02 468 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 MATN3O15232 486 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 XPOTO43592 962 aaKnown RBP4.84□□□□□ -1.63
HMGB1-204ENST00000399489 DLX3O60479 287 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 B4GALT3O60512 393 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 OFD1O75665 1012 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 GLRX3O76003 335 aaKnown RBP4.84□□□□□ -1.63
HMGB1-204ENST00000399489 CRTAMO95727 393 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 LRG1P02750 347 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 SOD2P04179 222 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 BTKQ06187 659 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 PRKG2Q13237 762 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 SF1Q15637 639 aaKnown RBP4.84□□□□□ -1.63
HMGB1-204ENST00000399489 CCDC92Q53HC0 331 aaPredicted RBP4.84□□□□□ -1.63
HMGB1-204ENST00000399489 SLC35F1Q5T1Q4 408 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 TMC5Q6UXY8 1006 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 USP53Q70EK8 1073 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 MAMDC2Q7Z304 686 aaPredicted RBP4.84□□□□□ -1.63
HMGB1-204ENST00000399489 TBC1D1Q86TI0 1168 aaPredicted RBP4.84□□□□□ -1.63
HMGB1-204ENST00000399489 KBTBD2Q8IY47 623 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 OR2C3Q8N628 320 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 NKAIN3Q8N8D7 197 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 TTLL11Q8NHH1 800 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 ACO2Q99798 780 aaKnown RBP4.84□□□□□ -1.63
HMGB1-204ENST00000399489 SLC6A20Q9NP91 592 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 KMT5AQ9NQR1 393 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 SH3GLB2Q9NR46 395 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 DLL4Q9NR61 685 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 SPTLC3Q9NUV7 552 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 MKS1Q9NXB0 559 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 SAMD15Q9P1V8 674 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 ASH2LQ9UBL3 628 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 FBXL7Q9UJT9 491 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 TCAF1Q9Y4C2 921 aa4.84□□□□□ -1.63
HMGB1-204ENST00000399489 PQBP1O60828 265 aaKnown RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 BAIAP3O94812 1187 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 CNOT4O95628 575 aaKnown RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 EPHB4P54760 987 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 SPIRE1Q08AE8 756 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 NFATC3Q12968 1075 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 PPFIA1Q13136 1202 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 SEMA5AQ13591 1074 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 NTRK3Q16288 839 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 SLFN13Q68D06 897 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 MYCT1Q8N699 235 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 TRIM63Q969Q1 353 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 PAWRQ96IZ0 340 aaKnown RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 SEMA4AQ9H3S1 761 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 ARFGAP3Q9NP61 516 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 HSPBP1Q9NZL4 362 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 LRCH1Q9Y2L9 728 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 TMX2Q9Y320 296 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms