RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 TTC17Q96AE7 1141 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 PLA2G4FQ68DD2 849 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 NUDT12Q9BQG2 462 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 VPS11Q9H270 941 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 OR6P1Q8NGX9 317 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 DPF3Q92784 378 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 NMT1P30419 496 aaKnown RBP12.07□□□□□ -0.48
TTC28-201ENST00000397906 MGAT5BQ3V5L5 792 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 CEP55Q53EZ4 464 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 CXorf38Q8TB03 319 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 RBM41Q96IZ5 413 aaKnown RBP12.07□□□□□ -0.48
TTC28-201ENST00000397906 FCGRTP55899 365 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 PRAMEP78395 509 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 ULK4Q96C45 1275 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 GBP5Q96PP8 586 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 SMARCAD1Q9H4L7 1026 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 CAMSAP1Q5T5Y3 1602 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 CAPN15O75808 1086 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 SUN1O94901 812 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 RGS7P49802 495 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 ZMYND12Q9H0C1 365 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 RRAGCQ9HB90 399 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 PRR23AA6NEV1 266 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 C19orf81C9J6K1 198 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 PTK2BQ14289 1009 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 DRAP1Q14919 205 aaPredicted RBP12.07□□□□□ -0.48
TTC28-201ENST00000397906 RAD51Q06609 339 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 TRMT2AQ8IZ69 625 aaKnown RBP12.07□□□□□ -0.48
TTC28-201ENST00000397906 PLEKHA5Q9HAU0 1116 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 CAMTA2O94983 1202 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 SLC15A2Q16348 729 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 KRT39Q6A163 491 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 TRIM42Q8IWZ5 723 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 LSM7Q9UK45 103 aaKnown RBP12.07□□□□□ -0.48
TTC28-201ENST00000397906 NFU1Q9UMS0 254 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 GPC5P78333 572 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 ZC3H18Q86VM9 953 aaKnown RBP12.07□□□□□ -0.48
TTC28-201ENST00000397906 TNIP3Q96KP6 325 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 ANLNQ9NQW6 1124 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 MTMR4Q9NYA4 1195 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 NDUFB10O96000 172 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 ROR1Q01973 937 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 HPS3Q969F9 1004 aa12.07□□□□□ -0.48
TTC28-201ENST00000397906 RNF17Q9BXT8 1623 aaKnown RBP12.06□□□□□ -0.48
TTC28-201ENST00000397906 ARHGEF40Q8TER5 1519 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 C1orf167Q5SNV9 1468 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 RASGRF2O14827 1237 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 TMEM132DQ14C87 1099 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 SRBD1Q8N5C6 995 aaKnown RBP12.06□□□□□ -0.48
TTC28-201ENST00000397906 AGBL1Q96MI9 1066 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 Q9H521 79 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 ENTPD7Q9NQZ7 604 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 PACSIN2Q9UNF0 486 aaPredicted RBP12.06□□□□□ -0.48
TTC28-201ENST00000397906 KDM6AO15550 1401 aaPredicted RBP12.06□□□□□ -0.48
TTC28-201ENST00000397906 DGKDQ16760 1214 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 TTC23LQ6PF05 361 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 ARHGDIAP52565 204 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 NEK9Q8TD19 979 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 STK36Q9NRP7 1315 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 HNRNPCL2B2RXH8 293 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 CTNND1O60716 968 aaKnown RBP12.06□□□□□ -0.48
TTC28-201ENST00000397906 HNRNPCL1O60812 293 aaKnown RBP12.06□□□□□ -0.48
TTC28-201ENST00000397906 CPT1AP50416 773 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 TECPR2O15040 1411 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 AMHR2Q16671 573 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 A0A1B0GUA9 196 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 LPAR1Q92633 364 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 ITGA4P13612 1032 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 EFCAB12Q6NXP0 572 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 H3BRJ5 948 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 ATP9BO43861 1147 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 GLE1Q53GS7 698 aaKnown RBP12.06□□□□□ -0.48
TTC28-201ENST00000397906 TRIM59Q8IWR1 403 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 AGR3Q8TD06 166 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 CDH6P55285 790 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 TTC8Q8TAM2 541 aa12.06□□□□□ -0.48
TTC28-201ENST00000397906 THPOP40225 353 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 ZNF507Q8TCN5 953 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 PGBD4Q96DM1 585 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 MAGEB5Q9BZ81 275 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 GRAP2O75791 330 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 FTLP02792 175 aaPredicted RBP12.05□□□□□ -0.48
TTC28-201ENST00000397906 NOVA2Q9UNW9 492 aaKnown RBP12.05□□□□□ -0.48
TTC28-201ENST00000397906 TRPM1Q7Z4N2 1603 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 CCT5P48643 541 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 ARL4DP49703 201 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 USP11P51784 963 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 IFT88Q13099 833 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 CCDC78A2IDD5 438 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 CDK17Q00537 523 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 IL31Q6EBC2 164 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 RNF180Q86T96 592 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 CASS4Q9NQ75 786 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 SUN2Q9UH99 717 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 MFAP3LO75121 409 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 TRPA1O75762 1119 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 EFNA5P52803 228 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 LRRC7Q96NW7 1537 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 FAM95CA0A1B0GW59 222 aa12.05□□□□□ -0.48
TTC28-201ENST00000397906 ARL4CP56559 192 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms