RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PSMD2Q13200 908 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 L1TD1Q5T7N2 865 aaKnown RBP24.31■■□□□ 1.48
SHMT1-203ENST00000354098 SCFD1Q8WVM8 642 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 CCDC47Q96A33 483 aaKnown RBP24.31■■□□□ 1.48
SHMT1-203ENST00000354098 BICD1Q96G01 975 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 GSDMAQ96QA5 445 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 PTPRHQ9HD43 1115 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 C1orf112Q9NSG2 853 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 FAM105AQ9NUU6 356 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 GDAQ9Y2T3 454 aa24.31■■□□□ 1.48
SHMT1-203ENST00000354098 A0A0U1RQF3 1178 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 TISP43B9A030 160 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 UPP2O95045 317 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 MBD3O95983 291 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ISM2Q6H9L7 571 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 FAM109BQ6ICB4 259 aaPredicted RBP24.3■■□□□ 1.48
SHMT1-203ENST00000354098 SLC27A1Q6PCB7 646 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 FAM43BQ6ZT52 329 aaPredicted RBP24.3■■□□□ 1.48
SHMT1-203ENST00000354098 CRIPAKQ8N1N5 446 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ZNF507Q8TCN5 953 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 HVCN1Q96D96 273 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ACCSQ96QU6 501 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 TRAIPQ9BWF2 469 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 NUP62CLQ9H1M0 184 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 TNFSF13BQ9Y275 285 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ANKRD63C9JTQ0 380 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 HNRNPDLO14979 420 aaKnown RBP24.3■■□□□ 1.48
SHMT1-203ENST00000354098 N4BP3O15049 544 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 NPTXRO95502 500 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ABCD1P33897 745 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ALCAMQ13740 583 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 FAM117BQ6P1L5 589 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 SLC39A4Q6P5W5 647 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ZPBP2Q6X784 338 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ECHDC2Q86YB7 292 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 TOP1MTQ969P6 601 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 CCDC51Q96ER9 411 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 PCDHB2Q9Y5E7 798 aa24.3■■□□□ 1.48
SHMT1-203ENST00000354098 ABLIM1O14639 778 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 PIGRP01833 764 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 ATP2A2P16615 1042 aaKnown RBP24.29■■□□□ 1.48
SHMT1-203ENST00000354098 ATF7P17544 494 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-203ENST00000354098 PROZP22891 400 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 LIG4P49917 911 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 STXBP4Q6ZWJ1 553 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 ZBTB33Q86T24 672 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 NELFCDQ8IXH7 590 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 SMYD4Q8IYR2 804 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-203ENST00000354098 HAPLN2Q9GZV7 340 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 KIAA1468Q9P260 1216 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 MAN1B1Q9UKM7 699 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 HES2Q9Y543 173 aa24.29■■□□□ 1.48
SHMT1-203ENST00000354098 GRXCR1A8MXD5 290 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 EIF3DO15371 548 aaKnown RBP eCLIP24.28■■□□□ 1.48
SHMT1-203ENST00000354098 TOM1L1O75674 476 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 RNF169Q8NCN4 708 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 SMG8Q8ND04 991 aaKnown RBP24.28■■□□□ 1.48
SHMT1-203ENST00000354098 TCHPQ9BT92 498 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 RMND1Q9NWS8 449 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 ANKFY1Q9P2R3 1169 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 MAPK8IP1Q9UQF2 711 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 IPPQ9Y573 584 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 PTPRSQ13332 1948 aa24.28■■□□□ 1.48
SHMT1-203ENST00000354098 MEIS3P2A8K0S8 358 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 BIN1O00499 593 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 ZNF598Q86UK7 904 aaKnown RBP24.27■■□□□ 1.48
SHMT1-203ENST00000354098 LPPQ93052 612 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 SLC9A7Q96T83 725 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 TRIM6Q9C030 488 aaPredicted RBP24.27■■□□□ 1.48
SHMT1-203ENST00000354098 CDT1Q9H211 546 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 RNF39Q9H2S5 420 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 NXF3Q9H4D5 531 aaKnown RBP24.27■■□□□ 1.48
SHMT1-203ENST00000354098 PCDHB7Q9Y5E2 793 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 ZMYM2Q9UBW7 1377 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 LAMA2P24043 3122 aaKnown RBP24.27■■□□□ 1.48
SHMT1-203ENST00000354098 LAMA3Q16787 3333 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 ZNF623O75123 536 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 ZNF568Q3ZCX4 644 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 MPZL3Q6UWV2 235 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 HERC6Q8IVU3 1022 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 SYCP3Q8IZU3 236 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 PHOSPHO2Q8TCD6 241 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 ADPGKQ9BRR6 497 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 TMEM206Q9H813 350 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 TMEM161AQ9NX61 479 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 EXOC7Q9UPT5 735 aa24.27■■□□□ 1.48
SHMT1-203ENST00000354098 TTC3P53804 2025 aa24.26■■□□□ 1.47
SHMT1-203ENST00000354098 HARSP12081 509 aaKnown RBP24.26■■□□□ 1.47
SHMT1-203ENST00000354098 BMP6P22004 513 aa24.26■■□□□ 1.47
SHMT1-203ENST00000354098 RAB27AP51159 221 aa24.26■■□□□ 1.47
SHMT1-203ENST00000354098 BMT2Q1RMZ1 405 aa24.26■■□□□ 1.47
SHMT1-203ENST00000354098 ZNF658Q5TYW1 1059 aaPredicted RBP24.26■■□□□ 1.47
SHMT1-203ENST00000354098 MRPL10Q7Z7H8 261 aaKnown RBP24.26■■□□□ 1.47
SHMT1-203ENST00000354098 NPAS4Q8IUM7 802 aa24.26■■□□□ 1.47
SHMT1-203ENST00000354098 ELAC1Q9H777 363 aaKnown RBP24.26■■□□□ 1.47
SHMT1-203ENST00000354098 LRFN2Q9ULH4 789 aa24.26■■□□□ 1.47
SHMT1-203ENST00000354098 CLDN3O15551 220 aa24.25■■□□□ 1.47
SHMT1-203ENST00000354098 FGFR1P11362 822 aa24.25■■□□□ 1.47
SHMT1-203ENST00000354098 ADSSP30520 456 aa24.25■■□□□ 1.47
SHMT1-203ENST00000354098 RABGGTBP53611 331 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms