RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HOXA2O43364 376 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 CASP1P29466 404 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 NMT1P30419 496 aaKnown RBP17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 HERC4Q5GLZ8 1057 aaPredicted RBP17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 ATF7IP2Q5U623 682 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 CCDC65Q8IXS2 484 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 CMTR2Q8IYT2 770 aaKnown RBP17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 ABI1Q8IZP0 508 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 FIBCD1Q8N539 461 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 HELQQ8TDG4 1101 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 PGBD4Q96DM1 585 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 C7orf25Q9BPX7 421 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 BLZF1Q9H2G9 400 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 RNF19AQ9NV58 838 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 TBC1D7Q9P0N9 293 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 SEL1LQ9UBV2 794 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 IPPQ9Y573 584 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 SZT2Q5T011 3432 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 FRMD3A2A2Y4 597 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 MEIS3P2A8K0S8 358 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 ZNF623O75123 536 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 CLLU1OSQ5K130 101 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 EEF1DP3Q658K8 133 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 SPRED2Q7Z698 418 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 DEFB123Q8N688 67 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 SMG8Q8ND04 991 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 BICD1Q96G01 975 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 PAGE5Q96GU1 130 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 FIZ1Q96SL8 496 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 ACO2Q99798 780 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 ADPGKQ9BRR6 497 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 TARS2Q9BW92 718 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 APOL6Q9BWW8 343 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 TMEM117Q9H0C3 514 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 SEMA6BQ9H3T3 888 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 MRPL44Q9H9J2 332 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 CERS4Q9HA82 394 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 MTUS1Q9ULD2 1270 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 HES2Q9Y543 173 aa17.46■□□□□ 0.39
CCDC28A-201ENST00000332797 ITGA4P13612 1032 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 SCP2P22307 547 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 COASYQ13057 564 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 CUL4BQ13620 913 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 MRPL10Q7Z7H8 261 aaKnown RBP17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 SLC17A8Q8NDX2 589 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 CNNM3Q8NE01 707 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 CASD1Q96PB1 797 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 NXF3Q9H4D5 531 aaKnown RBP17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 TBX20Q9UMR3 447 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 TNFSF13BQ9Y275 285 aa17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 FNDC1Q4ZHG4 1894 aaPredicted RBP17.45■□□□□ 0.38
CCDC28A-201ENST00000332797 ZNF202O95125 648 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 DCAF4L1Q3SXM0 396 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 ZC2HC1CQ53FD0 456 aaPredicted RBP17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 CNNM4Q6P4Q7 775 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 AGMOQ6ZNB7 445 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 KRBA2Q6ZNG9 492 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 HACE1Q8IYU2 909 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 ARNTL2Q8WYA1 636 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 TGS1Q96RS0 853 aaKnown RBP17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 C17orf80Q9BSJ5 609 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 RSAD1Q9HA92 442 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 OLFML3Q9NRN5 406 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 INPP5FQ9Y2H2 1132 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 MRPL42Q9Y6G3 142 aaKnown RBP17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 GADD45BO75293 160 aaPredicted RBP17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 GCNT3O95395 438 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 ABCD1P33897 745 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 GTF2BQ00403 316 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 ZNF568Q3ZCX4 644 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 GLB1LQ6UWU2 654 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 UNC13DQ70J99 1090 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 ZNF720Q7Z2F6 126 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 APBB1IPQ7Z5R6 666 aaPredicted RBP17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 ZBTB33Q86T24 672 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 TMEM87AQ8NBN3 555 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 KCNN1Q92952 543 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 RNF39Q9H2S5 420 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 ST6GALNAC4Q9H4F1 302 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 ANKFY1Q9P2R3 1169 aa17.44■□□□□ 0.38
CCDC28A-201ENST00000332797 HNRNPDLO14979 420 aaKnown RBP17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 HARSP12081 509 aaKnown RBP17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 AKAP5P24588 427 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 LIG4P49917 911 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 ERVK-21P61565 698 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 FAM160A1Q05DH4 1040 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 GRIN2CQ14957 1233 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 SPOUT1Q5T280 376 aaKnown RBP17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 MPZL3Q6UWV2 235 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 ZPBP2Q6X784 338 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 MAP4K3Q8IVH8 894 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 FMR1NBQ8N0W7 255 aaPredicted RBP17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 LRRC43Q8N309 656 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 HPS3Q969F9 1004 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 ZBTB45Q96K62 511 aaPredicted RBP17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 TCHPQ9BT92 498 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 FGFBP2Q9BYJ0 223 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 CDT1Q9H211 546 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 CHD7Q9P2D1 2997 aa17.43■□□□□ 0.38
CCDC28A-201ENST00000332797 HCSTQ9UBK5 93 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms