RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RNF217Q8TC41 542 aa15.08■□□□□ 0.01
COL7A1-201ENST00000328333 ZSCAN32Q9NX65 697 aa15.08■□□□□ 0.01
COL7A1-201ENST00000328333 CDK12Q9NYV4 1490 aaPredicted RBP15.08■□□□□ 0.01
COL7A1-201ENST00000328333 ERICH1Q86X53 443 aa15.08■□□□□ 0.01
COL7A1-201ENST00000328333 PRMT1Q99873 361 aaKnown RBP15.08■□□□□ 0.01
COL7A1-201ENST00000328333 CPXCR1Q8N123 301 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 KCNV2Q8TDN2 545 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 ADAMTS1Q9UHI8 967 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 PRDM15P57071 1507 aaPredicted RBP15.08■□□□□ 0
COL7A1-201ENST00000328333 O00370 1275 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 TTC33Q6PID6 262 aaPredicted RBP15.08■□□□□ 0
COL7A1-201ENST00000328333 TMEM35BQ8NCS4 154 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 ADAM22Q9P0K1 906 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 DLGAP3O95886 979 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 KRT6BP04259 564 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 KRT6CP48668 564 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 GPKOWQ92917 476 aaPredicted RBP eCLIP15.08■□□□□ 0
COL7A1-201ENST00000328333 RAD21L1Q9H4I0 556 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 STAP1Q9ULZ2 295 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 NFIBO00712 420 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 STX7O15400 261 aaKnown RBP15.08■□□□□ 0
COL7A1-201ENST00000328333 PTPRTO14522 1441 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 CASZ1Q86V15 1759 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 CCND2P30279 289 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 WASHC5Q12768 1159 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 RASGRF1Q13972 1273 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 ZCWPW2Q504Y3 356 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 FAR2Q96K12 515 aa15.08■□□□□ 0
COL7A1-201ENST00000328333 ATXN3P54252 364 aaPredicted RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 RAB42Q8N4Z0 105 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 MRPL48Q96GC5 212 aaKnown RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 COPRSQ9NQ92 184 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 TRIP4Q15650 581 aaPredicted RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 KYAT1Q16773 422 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 IL17RAQ96F46 866 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 CYP4F11Q9HBI6 524 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 ADD1P35611 737 aaKnown RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 KLHL12Q53G59 568 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 DPP8Q6V1X1 898 aaPredicted RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 TMC4Q7Z404 712 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 ZBED8Q8IZ13 594 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 CLEC4FQ8N1N0 589 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 ACAP3Q96P50 834 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 CDYLQ9Y232 598 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 ARHGEF40Q8TER5 1519 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 GOLGA8SH3BPF8 625 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 AKAP10O43572 662 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 CTCFP49711 727 aaPredicted RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 PKN2Q16513 984 aaKnown RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 BBS7Q8IWZ6 715 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 SH3TC2Q8TF17 1288 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 SUGT1Q9Y2Z0 365 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 PRR23AA6NEV1 266 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 LVRNQ6Q4G3 990 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 MCPH1Q8NEM0 835 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 DCLRE1BQ9H816 532 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 CCDC87Q9NVE4 849 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 PTCH1Q13635 1447 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 CEP152O94986 1710 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 GNPATO15228 680 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 ZAP70P43403 619 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 CERKLQ49MI3 558 aaPredicted RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 FAM9CQ8IZT9 166 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 ZNF483Q8TF39 744 aaPredicted RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 ARIH2O95376 493 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 TRIM49P0CI25 452 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 TRIM49CP0CI26 452 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 LRRC31Q6UY01 552 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 TBC1D19Q8N5T2 526 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 SPATA4Q8NEY3 305 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 PRRG3Q9BZD7 231 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 SAMSN1Q9NSI8 373 aaKnown RBP15.07■□□□□ 0
COL7A1-201ENST00000328333 VPS9D1Q9Y2B5 631 aa15.07■□□□□ 0
COL7A1-201ENST00000328333 PNMA8CA0A1B0GUJ8 204 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 ERVV-2B6SEH9 535 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 TAF5LO75529 589 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 TCF3P15923 654 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 HOXC9P31274 260 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 FAM47CQ5HY64 1035 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 MAPKAPK5Q8IW41 473 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 FBXO2Q9UK22 296 aaPredicted RBP15.06■□□□□ 0
COL7A1-201ENST00000328333 TSPOAP1O95153 1857 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 ADAMTS2O95450 1211 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 RBBP8Q99708 897 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 COBLO75128 1261 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 B4GALNT2Q8NHY0 566 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 ZNF564Q8TBZ8 553 aaPredicted RBP15.06■□□□□ 0
COL7A1-201ENST00000328333 ITIH6Q6UXX5 1313 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 C5orf58C9J3I9 102 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 CYP27A1Q02318 531 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 TRIP13Q15645 432 aaPredicted RBP15.06■□□□□ 0
COL7A1-201ENST00000328333 SEC16BQ96JE7 1060 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 VPS50Q96JG6 964 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 SUGCTQ9HAC7 445 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 SYNJ2BP-COX16A0A087WUM0 186 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 FAM25AB3EWG3 89 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 FAM25CB3EWG5 89 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 FAM25GB3EWG6 89 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 TRIM13O60858 407 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms