RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 DHX33Q9H6R0 707 aaKnown RBP18.28■□□□□ 0.52
CPSF4-201ENST00000292476 VIPAS39Q9H9C1 493 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 CEP72Q9P209 647 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 ARHGAP20Q9P2F6 1191 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 MYH9P35579 1960 aaKnown RBP18.28■□□□□ 0.52
CPSF4-201ENST00000292476 TMEM150BA6NC51 233 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 RCCD1A6NED2 376 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 SNAI1O95863 264 aaPredicted RBP18.28■□□□□ 0.52
CPSF4-201ENST00000292476 NR3C1P04150 777 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 EPB41P11171 864 aaKnown RBP18.28■□□□□ 0.52
CPSF4-201ENST00000292476 HOXD13P35453 343 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 KIF11P52732 1056 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 VSNL1P62760 191 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 ACVR2BQ13705 512 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 SLC9A9Q8IVB4 645 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 CCDC155Q8N6L0 562 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 NOA1Q8NC60 698 aaKnown RBP18.28■□□□□ 0.52
CPSF4-201ENST00000292476 ATP8B4Q8TF62 1192 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 PCYT2Q99447 389 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 POLD4Q9HCU8 107 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 ABCB6Q9NP58 842 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 KMT5AQ9NQR1 393 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 PDGFCQ9NRA1 345 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 PSD3Q9NYI0 1048 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 ERAP1Q9NZ08 941 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 ZHX1Q9UKY1 873 aaPredicted RBP18.28■□□□□ 0.52
CPSF4-201ENST00000292476 PCDHA13Q9Y5I0 950 aa18.28■□□□□ 0.52
CPSF4-201ENST00000292476 CCDC169A6NNP5 214 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 RBAK-RBAKDNI3L0D1 243 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 RHOXF2BP0C7M4 288 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 EMC2Q15006 297 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 DUSP28Q4G0W2 176 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 ZC2HC1CQ53FD0 456 aaPredicted RBP18.27■□□□□ 0.52
CPSF4-201ENST00000292476 TCP11Q8WWU5 503 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 KCNN1Q92952 543 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 ZNF333Q96JL9 665 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 ALS2CR12Q96Q35 445 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 RHOXF2Q9BQY4 288 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 SH2D3AQ9BRG2 576 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 KATNBL1Q9H079 304 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 MMRN2Q9H8L6 949 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.27■□□□□ 0.52
CPSF4-201ENST00000292476 ARMCX3Q9UH62 379 aaPredicted RBP18.27■□□□□ 0.52
CPSF4-201ENST00000292476 FRMD4BQ9Y2L6 1034 aa18.27■□□□□ 0.52
CPSF4-201ENST00000292476 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.27■□□□□ 0.52
CPSF4-201ENST00000292476 MYH11P35749 1972 aa18.27■□□□□ 0.51
CPSF4-201ENST00000292476 DOCK5Q9H7D0 1870 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 ZNF263O14978 683 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 TGFB1I1O43294 461 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 HBP1O60381 514 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 PPFIA4O75335 1185 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 PSMC2P35998 433 aaKnown RBP18.26■□□□□ 0.51
CPSF4-201ENST00000292476 NPTX2P47972 431 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 ARHGAP1Q07960 439 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 TARBP2Q15633 366 aaKnown RBP18.26■□□□□ 0.51
CPSF4-201ENST00000292476 ASTE1Q2TB18 679 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-201ENST00000292476 OLFML2BQ68BL8 750 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 C12orf56Q8IXR9 622 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 RNF10Q8N5U6 811 aaKnown RBP18.26■□□□□ 0.51
CPSF4-201ENST00000292476 SLAIN1Q8ND83 568 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 NPLOC4Q8TAT6 608 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 EEF2KMTQ96G04 330 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 DEF6Q9H4E7 631 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 LUC7LQ9NQ29 371 aaKnown RBP18.26■□□□□ 0.51
CPSF4-201ENST00000292476 FAM207AQ9NSI2 230 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-201ENST00000292476 TELO2Q9Y4R8 837 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 WDR81Q562E7 1941 aa18.26■□□□□ 0.51
CPSF4-201ENST00000292476 BRCA2P51587 3418 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 LRRC53A6NM62 1247 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 EIF4A3P38919 411 aaKnown RBP18.25■□□□□ 0.51
CPSF4-201ENST00000292476 TRIM59Q8IWR1 403 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 EXOC4Q96A65 974 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 POLR3FQ9H1D9 316 aaPredicted RBP18.25■□□□□ 0.51
CPSF4-201ENST00000292476 GPRC5CQ9NQ84 441 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 AGPAT3Q9NRZ7 376 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 SNX12Q9UMY4 172 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 ENC1O14682 589 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 EPHB6O15197 1021 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 AKR1B10O60218 316 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 MAFO75444 373 aaPredicted RBP18.25■□□□□ 0.51
CPSF4-201ENST00000292476 TCP1P17987 556 aaKnown RBP18.25■□□□□ 0.51
CPSF4-201ENST00000292476 NAMPTP43490 491 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 MTFR1Q15390 333 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 CCDC70Q6NSX1 233 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 RRAGAQ7L523 313 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 CACNA2D4Q7Z3S7 1137 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 TMEM161BQ8NDZ6 487 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 USP6NLQ92738 828 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 MMS19Q96T76 1030 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 APBA2Q99767 749 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 MED4Q9NPJ6 270 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 XPNPEP1Q9NQW7 623 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 HDAC6Q9UBN7 1215 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 TBX20Q9UMR3 447 aa18.25■□□□□ 0.51
CPSF4-201ENST00000292476 ZMYM2Q9UBW7 1377 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 SLC16A4O15374 487 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 SERPING1P05155 500 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 XRCC5P13010 732 aaKnown RBP18.24■□□□□ 0.51
CPSF4-201ENST00000292476 ADCYAP1R1P41586 468 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 CYP27A1Q02318 531 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms