RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 ZNF790Q6PG37 636 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 DHX32Q7L7V1 743 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 CATIPQ7Z7H3 387 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 DZIP1Q86YF9 867 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 ZNF444Q8N0Y2 327 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 COPS5Q92905 334 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 FAM89AQ96GI7 184 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 NT5C1BQ96P26 610 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 ALG1Q9BT22 464 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 LMBRD1Q9NUN5 540 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 ZNF652Q9Y2D9 606 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 MPHOSPH10O00566 681 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 CD2BP2O95400 341 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 CPP00450 1065 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 AGXTP21549 392 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 C5AR1P21730 350 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 COPAP53621 1224 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 SF1Q15637 639 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 KIF4BQ2VIQ3 1234 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 GJC2Q5T442 439 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 CEP135Q66GS9 1140 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 TMCO3Q6UWJ1 677 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 RSPO2Q6UXX9 243 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 NCAPG2Q86XI2 1143 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 IPO4Q8TEX9 1081 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 ZNF384Q8TF68 577 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 KCTD13Q8WZ19 329 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 RFFLQ8WZ73 363 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 KIAA1191Q96A73 305 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 EDC3Q96F86 508 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 DBNDD2Q9BQY9 259 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 CHCHD6Q9BRQ6 235 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 RNF41Q9H4P4 317 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 NSMCE4AQ9NXX6 385 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 CCDC171Q6TFL3 1326 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 MYO1FO00160 1098 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 DYNC1I1O14576 645 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 RNF113AO15541 343 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 CAVIN2O95810 425 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 ZFYP08048 801 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 DHRS4L1P0CG22 281 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 HSPA6P17066 643 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 PTGS1P23219 599 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 AFMP43652 599 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 UBASH3AP57075 661 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 LACTBP83111 547 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 C1orf228Q6PIY5 440 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 DSTYKQ6XUX3 929 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 KIAA1328Q86T90 577 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 PTRH1Q86Y79 214 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 BRSK2Q8IWQ3 736 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 AOPEPQ8N6M6 819 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 ZNF713Q8N859 430 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 OR2W6PQ8NHA6 318 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 NPLOC4Q8TAT6 608 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 MRPS27Q92552 414 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 ACSBG1Q96GR2 724 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 SUCLG2Q96I99 432 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 DCAF5Q96JK2 942 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 ZSCAN10Q96SZ4 725 aaPredicted RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 RMDN3Q96TC7 470 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 CELF4Q9BZC1 486 aaKnown RBP3.21□□□□□ -1.9
HERC4-201ENST00000277817 TMEM8AQ9HCN3 771 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 PRR13Q9NZ81 148 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 KANSL3Q9P2N6 904 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 PALD1Q9ULE6 856 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 CORINQ9Y5Q5 1042 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.21□□□□□ -1.9
HERC4-201ENST00000277817 COL4A5P29400 1685 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 ABCC4O15439 1325 aa3.21□□□□□ -1.9
HERC4-201ENST00000277817 PTPRFP10586 1907 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 A0A1B0GVL5 298 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 PTPDC1A2A3K4 754 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 CCDC66A2RUB6 948 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 TSPY2A6NKD2 308 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 KIF2AO00139 706 aaPredicted RBP3.2□□□□□ -1.9
HERC4-201ENST00000277817 RGS13O14921 159 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 SLC27A2O14975 620 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 SPTLC2O15270 562 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 POLR3GO15318 223 aaPredicted RBP3.2□□□□□ -1.9
HERC4-201ENST00000277817 PRODHO43272 600 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 NEMFO60524 1076 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 INMTO95050 263 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 MLYCDO95822 493 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 S1PR4O95977 384 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 JMJD7P0C870 316 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 CASQ1P31415 396 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 GSDMDP57764 484 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 EIF4A1P60842 406 aaKnown RBP3.2□□□□□ -1.9
HERC4-201ENST00000277817 SNW1Q13573 536 aaKnown RBP3.2□□□□□ -1.9
HERC4-201ENST00000277817 INPP5AQ14642 412 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 WTAPQ15007 396 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 PDCD1Q15116 288 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 FAM110CQ1W6H9 321 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 NSMFQ6X4W1 530 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 GAS2L3Q86XJ1 694 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 MCATQ8IVS2 390 aaKnown RBP3.2□□□□□ -1.9
HERC4-201ENST00000277817 NDUFAF2Q8N183 169 aa3.2□□□□□ -1.9
HERC4-201ENST00000277817 C17orf53Q8N3J3 647 aaPredicted RBP3.2□□□□□ -1.9
HERC4-201ENST00000277817 DDX17Q92841 729 aaKnown RBP3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms