RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 LAMC2Q13753 1193 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 KLHL29Q96CT2 875 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 UNC45AQ9H3U1 944 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 NHEJ1Q9H9Q4 299 aaPredicted RBP13.58□□□□□ -0.24
USP40-201ENST00000251722 RGL1Q9NZL6 768 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 CFAP73A6NFT4 308 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 PSMD3O43242 534 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 LRRN2O75325 713 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 E2F6O75461 281 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 CYBBP04839 570 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 CHRNA5P30532 468 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 SDC4P31431 198 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 PPP4CP60510 307 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 SCFD2Q8WU76 684 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 PDXKO00764 312 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 GPC5P78333 572 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 ACTN3Q08043 901 aaPredicted RBP13.58□□□□□ -0.24
USP40-201ENST00000251722 CYB5R4Q7L1T6 521 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 ATG9AQ7Z3C6 839 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 EIF2AK1Q9BQI3 630 aaKnown RBP13.58□□□□□ -0.24
USP40-201ENST00000251722 WDR35Q9P2L0 1181 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 DNAJC12Q9UKB3 198 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 PCDHA13Q9Y5I0 950 aa13.58□□□□□ -0.24
USP40-201ENST00000251722 HOXA2O43364 376 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 PMLP29590 882 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 NR1H3Q13133 447 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 NXNQ6DKJ4 435 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 SCYL3Q8IZE3 742 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 LSM7Q9UK45 103 aaKnown RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 ANGPTL2Q9UKU9 493 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 LGALS16A8MUM7 142 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 GGPS1O95749 300 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 HNRNPH1P31943 449 aaKnown RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 MRPS35P82673 323 aaKnown RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 CACNB1Q02641 598 aaPredicted RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 ADCY2Q08462 1091 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 TAF1BQ53T94 588 aaPredicted RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 MSL3Q8N5Y2 521 aaKnown RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 DPH5Q9H2P9 285 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 A0A0G2JLW4 131 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 EFHC2Q5JST6 749 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 RNF180Q86T96 592 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 ELOA2Q8IYF1 753 aaPredicted RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 TXLNGQ9NUQ3 528 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 DKK3Q9UBP4 350 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 H3BRJ5 948 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 ZNF18P17022 549 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 GMPSP49915 693 aaPredicted RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 SKOR1P84550 965 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 ATP2C1P98194 919 aaPredicted RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 TOB2Q14106 344 aaPredicted RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 KRT33BQ14525 404 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 JADE1Q6IE81 842 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 ALKBH5Q6P6C2 394 aaKnown RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 CDKL3Q8IVW4 592 aaPredicted RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 GPRASP2Q96D09 838 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 INPP5FQ9Y2H2 1132 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 GPR75-ASB3A0A0A6YYF3 556 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 EIF4A3P38919 411 aaKnown RBP13.57□□□□□ -0.24
USP40-201ENST00000251722 CCDC15Q0P6D6 951 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 CDC42EP5Q6NZY7 148 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 ANKRD42Q8N9B4 389 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 GGA3Q9NZ52 723 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 ITSN1Q15811 1721 aa13.57□□□□□ -0.24
USP40-201ENST00000251722 CCL15-CCL14A0A0B4J2E2 113 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 STAG3L1P0CL83 205 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 CCL15Q16663 113 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 GJC2Q5T442 439 aaPredicted RBP13.56□□□□□ -0.24
USP40-201ENST00000251722 CC2D1AQ6P1N0 951 aaPredicted RBP13.56□□□□□ -0.24
USP40-201ENST00000251722 USP17L6PQ6QN14 398 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 FAM43BQ6ZT52 329 aaPredicted RBP13.56□□□□□ -0.24
USP40-201ENST00000251722 DCP1BQ8IZD4 617 aaKnown RBP13.56□□□□□ -0.24
USP40-201ENST00000251722 PREX1Q8TCU6 1659 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 HBP1O60381 514 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 RBP5P82980 135 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 DPCR1Q3MIW9 517 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 TTC23LQ6PF05 361 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 SARM1Q6SZW1 724 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 RINLQ6ZS11 566 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 KIRREL3Q8IZU9 778 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 PDLIM2Q96JY6 352 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 C17orf75Q9HAS0 396 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 AGO2Q9UKV8 859 aaKnown RBP13.56□□□□□ -0.24
USP40-201ENST00000251722 KDM1AO60341 852 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 PRKCBP05771 671 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 SERPINB6P35237 376 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 NEK2P51955 445 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 ANGEL2Q5VTE6 544 aaKnown RBP13.56□□□□□ -0.24
USP40-201ENST00000251722 RAB42Q8N4Z0 105 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 CCSER1Q9C0I3 900 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 PSMD14O00487 310 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 NKRFO15226 690 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP40-201ENST00000251722 CYLC2Q14093 348 aaPredicted RBP13.56□□□□□ -0.24
USP40-201ENST00000251722 PSMD6Q15008 389 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 IFT43Q96FT9 208 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 DESI2Q9BSY9 194 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 MROH8Q9H579 483 aa13.56□□□□□ -0.24
USP40-201ENST00000251722 SLC16A4O15374 487 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 NDUFA10O95299 355 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 SCARA5Q6ZMJ2 495 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms