RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YCL021W-AQ96VH3 125 aa1.02□□□□□ -2.25
CDC39YCR093W SSA3P09435 649 aaKnown RBP1.02□□□□□ -2.25
CDC39YCR093W EXG1P23776 448 aaKnown RBP1.02□□□□□ -2.25
CDC39YCR093W SUR1P33300 382 aa1.02□□□□□ -2.25
CDC39YCR093W RPC37P36121 282 aa1.02□□□□□ -2.25
CDC39YCR093W YIL067CP40514 678 aa1.02□□□□□ -2.25
CDC39YCR093W BIO3P50277 480 aa1.02□□□□□ -2.25
CDC39YCR093W PRP38Q00723 242 aaPredicted RBP1.02□□□□□ -2.25
CDC39YCR093W HAL1Q01766 294 aa1.02□□□□□ -2.25
CDC39YCR093W ENT5Q03769 411 aaKnown RBP1.02□□□□□ -2.25
CDC39YCR093W IES3Q12345 250 aa1.02□□□□□ -2.25
CDC39YCR093W NUM1Q00402 2748 aa1.02□□□□□ -2.25
CDC39YCR093W GPI12P23797 304 aa1.01□□□□□ -2.25
CDC39YCR093W CSM1P25651 190 aa1.01□□□□□ -2.25
CDC39YCR093W PEX3P28795 441 aa1.01□□□□□ -2.25
CDC39YCR093W OM14P38325 134 aa1.01□□□□□ -2.25
CDC39YCR093W PHO89P38361 574 aa1.01□□□□□ -2.25
CDC39YCR093W OXA1P39952 402 aa1.01□□□□□ -2.25
CDC39YCR093W ASG7P46993 209 aa1.01□□□□□ -2.25
CDC39YCR093W COS10P52924 374 aa1.01□□□□□ -2.25
CDC39YCR093W LST7P53237 242 aa1.01□□□□□ -2.25
CDC39YCR093W MRX11Q03079 207 aa1.01□□□□□ -2.25
CDC39YCR093W PRM15Q03262 622 aa1.01□□□□□ -2.25
CDC39YCR093W NAT4Q04751 285 aa1.01□□□□□ -2.25
CDC39YCR093W TDH3P00359 332 aaKnown RBP RIP-Chip data1.01□□□□□ -2.25not detected
CDC39YCR093W OPI3P05375 206 aa1.01□□□□□ -2.25
CDC39YCR093W OM45P16547 393 aa1.01□□□□□ -2.25
CDC39YCR093W MCK1P21965 375 aaKnown RBP1.01□□□□□ -2.25
CDC39YCR093W IMP1P28627 190 aa1.01□□□□□ -2.25
CDC39YCR093W CSE2P33308 149 aa1.01□□□□□ -2.25
CDC39YCR093W MRP21P38175 177 aa1.01□□□□□ -2.25
CDC39YCR093W RRF1P38771 230 aa1.01□□□□□ -2.25
CDC39YCR093W RPL10P41805 221 aaKnown RBP1.01□□□□□ -2.25
CDC39YCR093W GPI8P49018 411 aa1.01□□□□□ -2.25
CDC39YCR093W MRX9Q07349 420 aaKnown RBP1.01□□□□□ -2.25
CDC39YCR093W YLL007CQ07799 665 aa1.01□□□□□ -2.25
CDC39YCR093W STE3P06783 470 aa1.01□□□□□ -2.25
CDC39YCR093W CKI1P20485 582 aa1.01□□□□□ -2.25
CDC39YCR093W YKL070WP36087 169 aa1.01□□□□□ -2.25
CDC39YCR093W ANR2P36090 516 aaPredicted RBP1.01□□□□□ -2.25
CDC39YCR093W MSG5P38590 489 aa1.01□□□□□ -2.25
CDC39YCR093W YPS5P53057 165 aa1.01□□□□□ -2.25
CDC39YCR093W SDS23P53172 527 aa1.01□□□□□ -2.25
CDC39YCR093W YGR015CP53208 328 aa1.01□□□□□ -2.25
CDC39YCR093W YOL159C-AQ3E769 90 aa1.01□□□□□ -2.25
CDC39YCR093W PET494P07390 489 aaPredicted RBP1.01□□□□□ -2.25
CDC39YCR093W MRPL37P36532 105 aa1.01□□□□□ -2.25
CDC39YCR093W LOC1P43586 204 aaPredicted RBP1.01□□□□□ -2.25
CDC39YCR093W PMT5P52867 743 aa1.01□□□□□ -2.25
CDC39YCR093W MTM1P53320 366 aa1.01□□□□□ -2.25
CDC39YCR093W SED5Q01590 340 aa1.01□□□□□ -2.25
CDC39YCR093W SPP2Q02521 185 aa1.01□□□□□ -2.25
CDC39YCR093W YDR124WQ04608 324 aa1.01□□□□□ -2.25
CDC39YCR093W VAC14Q06708 880 aa1.01□□□□□ -2.25
CDC39YCR093W ECT1P33412 323 aa1.01□□□□□ -2.25
CDC39YCR093W YHR122WP38829 231 aa1.01□□□□□ -2.25
CDC39YCR093W TIM17P39515 158 aa1.01□□□□□ -2.25
CDC39YCR093W AIM20P40451 204 aa1.01□□□□□ -2.25
CDC39YCR093W GAB1P41733 394 aa1.01□□□□□ -2.25
CDC39YCR093W KRE28Q04431 385 aa1.01□□□□□ -2.25
CDC39YCR093W ATG17Q06410 417 aa1.01□□□□□ -2.25
CDC39YCR093W YPR063CQ12160 140 aa1.01□□□□□ -2.25
CDC39YCR093W ISD11Q6Q560 94 aa1.01□□□□□ -2.25
CDC39YCR093W LAG2Q92325 660 aa1.01□□□□□ -2.25
CDC39YCR093W MRS3P10566 314 aa1□□□□□ -2.25
CDC39YCR093W RPL4AP10664 362 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W ARO3P14843 370 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W DAL81P21657 970 aa1□□□□□ -2.25
CDC39YCR093W MKK1P32490 508 aa1□□□□□ -2.25
CDC39YCR093W ALK2P32789 676 aaPredicted RBP1□□□□□ -2.25
CDC39YCR093W BUD2P33314 1104 aa1□□□□□ -2.25
CDC39YCR093W YKL187CP34231 750 aa1□□□□□ -2.25
CDC39YCR093W ECM4P36156 370 aa1□□□□□ -2.25
CDC39YCR093W IST2P38250 946 aa1□□□□□ -2.25
CDC39YCR093W YHR218WP38899 603 aa1□□□□□ -2.25
CDC39YCR093W PMT4P46971 762 aa1□□□□□ -2.25
CDC39YCR093W RPL4BP49626 362 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W YRA1Q12159 226 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W RSR1P13856 272 aa1□□□□□ -2.25
CDC39YCR093W TFS1P14306 219 aa1□□□□□ -2.25
CDC39YCR093W TPM1P17536 199 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W MXR2P25566 168 aa1□□□□□ -2.25
CDC39YCR093W RCY1P39531 840 aa1□□□□□ -2.25
CDC39YCR093W LCP5P40079 357 aaPredicted RBP1□□□□□ -2.25
CDC39YCR093W RRN5Q02983 363 aa1□□□□□ -2.25
CDC39YCR093W API2Q04413 109 aa1□□□□□ -2.25
CDC39YCR093W MMT2Q08970 484 aa1□□□□□ -2.25
CDC39YCR093W AMD1P15274 810 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W CAT2P32796 670 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W MRPL3P36516 390 aa1□□□□□ -2.25
CDC39YCR093W HAM1P47119 197 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W NUP84P52891 726 aa1□□□□□ -2.25
CDC39YCR093W LIF1P53150 421 aa1□□□□□ -2.25
CDC39YCR093W YLR177WQ06251 628 aa1□□□□□ -2.25
CDC39YCR093W IPP1P00817 287 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W RPL18AP0CX49 186 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W RPL18BP0CX50 186 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W NOP1P15646 327 aaKnown RBP1□□□□□ -2.25
CDC39YCR093W RNA15P25299 296 aaPredicted RBP1□□□□□ -2.25
CDC39YCR093W SEC1P30619 724 aaKnown RBP1□□□□□ -2.25
Retrieved 100 of 5,963 RNA–protein pairs in 7.8 ms