RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 CABP7Q86V35 215 aa26.59■■□□□ 1.85
CPSF1-214ENST00000622776 PPFIBP1Q86W92 1011 aa26.59■■□□□ 1.85
CPSF1-214ENST00000622776 ZDHHC14Q8IZN3 488 aa26.59■■□□□ 1.85
CPSF1-214ENST00000622776 TDRD5Q8NAT2 981 aaKnown RBP26.59■■□□□ 1.85
CPSF1-214ENST00000622776 MINDY3Q9H8M7 445 aa26.59■■□□□ 1.85
CPSF1-214ENST00000622776 RSAD1Q9HA92 442 aa26.59■■□□□ 1.85
CPSF1-214ENST00000622776 FAM86C1Q9NVL1 165 aa26.59■■□□□ 1.85
CPSF1-214ENST00000622776 DBR1Q9UK59 544 aaKnown RBP26.59■■□□□ 1.85
CPSF1-214ENST00000622776 DDHD2O94830 711 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 ASGR2P07307 311 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 LAMTOR4Q0VGL1 99 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 EPHA7Q15375 998 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 UBXN11Q5T124 520 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 TMC5Q6UXY8 1006 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 C4orf19Q8IY42 314 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 HAS1Q92839 578 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 IRF2BPLQ9H1B7 796 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 LIMD1Q9UGP4 676 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 USTQ9Y2C2 406 aa26.58■■□□□ 1.85
CPSF1-214ENST00000622776 TBX3O15119 743 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 CDKL5O76039 1030 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 AFF1P51825 1210 aaKnown RBP26.57■■□□□ 1.84
CPSF1-214ENST00000622776 NUBP1P53384 320 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 PLCD3Q8N3E9 789 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 FEZF2Q8TBJ5 459 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 LXNQ9BS40 222 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 SMOC2Q9H3U7 446 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 BMP2KQ9NSY1 1161 aaPredicted RBP26.57■■□□□ 1.84
CPSF1-214ENST00000622776 KANSL3Q9P2N6 904 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 STK39Q9UEW8 545 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 CNTNAP2Q9UHC6 1331 aa26.57■■□□□ 1.84
CPSF1-214ENST00000622776 MARCH6O60337 910 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 CCNT1O60563 726 aaKnown RBP26.56■■□□□ 1.84
CPSF1-214ENST00000622776 ALDH2P05091 517 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 XBP1P17861 261 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 YWHABP31946 246 aaKnown RBP26.56■■□□□ 1.84
CPSF1-214ENST00000622776 SCRN1Q12765 414 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 PIK3AP1Q6ZUJ8 805 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 OTUD6AQ7L8S5 288 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 KLHL5Q96PQ7 755 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 FAM193BQ96PV7 902 aaPredicted RBP26.56■■□□□ 1.84
CPSF1-214ENST00000622776 TMEM175Q9BSA9 504 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 EMILIN2Q9BXX0 1053 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 SFXN1Q9H9B4 322 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 GJB4Q9NTQ9 266 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 RGL1Q9NZL6 768 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 FAN1Q9Y2M0 1017 aa26.56■■□□□ 1.84
CPSF1-214ENST00000622776 ASAP2O43150 1006 aa26.55■■□□□ 1.84
CPSF1-214ENST00000622776 GAS2O43903 313 aaKnown RBP26.55■■□□□ 1.84
CPSF1-214ENST00000622776 SSBP05455 408 aaKnown RBP eCLIP26.55■■□□□ 1.84
CPSF1-214ENST00000622776 KLRC2P26717 231 aa26.55■■□□□ 1.84
CPSF1-214ENST00000622776 EMC2Q15006 297 aa26.55■■□□□ 1.84
CPSF1-214ENST00000622776 FERMT3Q86UX7 667 aa26.55■■□□□ 1.84
CPSF1-214ENST00000622776 RNF149Q8NC42 400 aa26.55■■□□□ 1.84
CPSF1-214ENST00000622776 OXER1Q8TDS5 423 aa26.55■■□□□ 1.84
CPSF1-214ENST00000622776 TCP11Q8WWU5 503 aa26.55■■□□□ 1.84
CPSF1-214ENST00000622776 ATOH1Q92858 354 aaPredicted RBP26.55■■□□□ 1.84
CPSF1-214ENST00000622776 NAP1L4Q99733 375 aaKnown RBP26.55■■□□□ 1.84
CPSF1-214ENST00000622776 LILRB3O75022 631 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 POMCP01189 267 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 CNPP09543 421 aaKnown RBP26.54■■□□□ 1.84
CPSF1-214ENST00000622776 NCLP19338 710 aaKnown RBP26.54■■□□□ 1.84
CPSF1-214ENST00000622776 CLCN4P51793 760 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 XKR9Q5GH70 373 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 NCAPH2Q6IBW4 605 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 GPR149Q86SP6 731 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 DYDC2Q96IM9 177 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 ZSWIM4Q9H7M6 989 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 STK36Q9NRP7 1315 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 FAM186AA6NE01 2351 aa26.54■■□□□ 1.84
CPSF1-214ENST00000622776 SPDYE4A6NLX3 237 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 H0Y858 1186 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 NRP1O14786 923 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 ZBTB39O15060 712 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 GALR2O43603 387 aaPredicted RBP26.53■■□□□ 1.84
CPSF1-214ENST00000622776 ST18O60284 1047 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 SPIRE1Q08AE8 756 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 CTTNQ14247 550 aaKnown RBP26.53■■□□□ 1.84
CPSF1-214ENST00000622776 POTEDQ86YR6 584 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 CNNM3Q8NE01 707 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 MRPL17Q9NRX2 175 aaKnown RBP26.53■■□□□ 1.84
CPSF1-214ENST00000622776 USP34Q70CQ2 3546 aa26.53■■□□□ 1.84
CPSF1-214ENST00000622776 DTNBO60941 627 aa26.52■■□□□ 1.84
CPSF1-214ENST00000622776 CYP4A11Q02928 519 aa26.52■■□□□ 1.84
CPSF1-214ENST00000622776 EARS2Q5JPH6 523 aaKnown RBP26.52■■□□□ 1.84
CPSF1-214ENST00000622776 CCDC149Q6ZUS6 474 aa26.52■■□□□ 1.84
CPSF1-214ENST00000622776 TMEM105Q8N8V8 129 aa26.52■■□□□ 1.84
CPSF1-214ENST00000622776 SMG8Q8ND04 991 aaKnown RBP26.52■■□□□ 1.84
CPSF1-214ENST00000622776 ACSF2Q96CM8 615 aaPredicted RBP26.52■■□□□ 1.84
CPSF1-214ENST00000622776 UBN1Q9NPG3 1134 aa26.52■■□□□ 1.84
CPSF1-214ENST00000622776 GFRA3O60609 400 aa26.51■■□□□ 1.83
CPSF1-214ENST00000622776 PFKFB2O60825 505 aa26.51■■□□□ 1.83
CPSF1-214ENST00000622776 ERLIN2O94905 339 aa26.51■■□□□ 1.83
CPSF1-214ENST00000622776 BAG4O95429 457 aaKnown RBP26.51■■□□□ 1.83
CPSF1-214ENST00000622776 ITGA4P13612 1032 aa26.51■■□□□ 1.83
CPSF1-214ENST00000622776 OTOP3Q7RTS5 596 aa26.51■■□□□ 1.83
CPSF1-214ENST00000622776 SLFN12Q8IYM2 578 aa26.51■■□□□ 1.83
CPSF1-214ENST00000622776 MTRQ99707 1265 aa26.51■■□□□ 1.83
CPSF1-214ENST00000622776 XPNPEP1Q9NQW7 623 aa26.51■■□□□ 1.83
CPSF1-214ENST00000622776 TPCN1Q9ULQ1 816 aa26.51■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms