RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 LRRC71Q8N4P6 559 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 OR2W6PQ8NHA6 318 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 SREK1Q8WXA9 508 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 PURBQ96QR8 312 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 SNX25Q9H3E2 840 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 MLXIPLQ9NP71 852 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 SLC5A4Q9NY91 659 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 ICAM1P05362 532 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 HOXA7P31268 230 aaPredicted RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 KCNJ6P48051 423 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 SNX16P57768 344 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 SLFN12LQ6IEE8 588 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 PNMA8AQ86V59 439 aaPredicted RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 CACNA2D3Q8IZS8 1091 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 CCDC110Q8TBZ0 833 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 SEL1LQ9UBV2 794 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 ADAM21Q9UKJ8 722 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 KLRC1P26715 233 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 FAM133BQ5BKY9 247 aaKnown RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 MCPH1Q8NEM0 835 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 WHAMMQ8TF30 809 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 MOV10L1Q9BXT6 1211 aaKnown RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 CELF4Q9BZC1 486 aaKnown RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 CAPN6Q9Y6Q1 641 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 WDR91A4D1P6 747 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 RNF8O76064 485 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 NR3C2P08235 984 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 SREBF1P36956 1147 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 TBX2Q13207 712 aaPredicted RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 DACT2Q5SW24 774 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 PPP1R13LQ8WUF5 828 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 DUSP9Q99956 384 aaKnown RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 TOPORSQ9NS56 1045 aaPredicted RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 RNF14Q9UBS8 474 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 USP20Q9Y2K6 914 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 LRP6O75581 1613 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 M0QYV0 167 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 TTI1O43156 1089 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 POLR2BP30876 1174 aaKnown RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 C2CD6Q53TS8 623 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 MUM1L1Q5H9M0 696 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 ALS2CLQ60I27 953 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 RNF149Q8NC42 400 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 EHD4Q9H223 541 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 GRID2IPA4D2P6 1211 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 MED7O43513 233 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 PPFIA4O75335 1185 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 TM4SF1P30408 202 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 CIITAP33076 1130 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 PHBP35232 272 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 ITKQ08881 620 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 NBPF12Q5TAG4 269 aaPredicted RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 ZNF384Q8TF68 577 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 POLR3CQ9BUI4 534 aaPredicted RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 GLIS2Q9BZE0 524 aaPredicted RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 MRPL47Q9HD33 250 aaKnown RBP9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 PCSK1NQ9UHG2 260 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 CD2APQ9Y5K6 639 aa9.57□□□□□ -0.88
PDLIM5-222ENST00000615540 COL1A1P02452 1464 aaPredicted RBP9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 ORC1Q13415 861 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 CUL1Q13616 776 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 NAB2Q15742 525 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 C6orf163Q5TEZ5 329 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 CDR2LQ86X02 465 aaPredicted RBP9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 OR6B3Q8NGW1 331 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 TCP11Q8WWU5 503 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 STK33Q9BYT3 514 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 BLOC1S4Q9NUP1 217 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 INTS9Q9NV88 658 aaKnown RBP9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 TRPM3Q9HCF6 1732 aaPredicted RBP9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 RAD51CO43502 376 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 SGPL1O95470 568 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 TMEM119Q4V9L6 283 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 SH2D3CQ8N5H7 860 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 ACSF2Q96CM8 615 aaPredicted RBP9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 DOT1LQ8TEK3 1739 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 MAN1A1P33908 653 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 MAPK6Q16659 721 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 DDX42Q86XP3 938 aaKnown RBP eCLIP9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 ADAM33Q9BZ11 813 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 AGPAT3Q9NRZ7 376 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 HPCAL4Q9UM19 191 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 EML1O00423 815 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 PMS2P54278 862 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 CCDC14Q49A88 953 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 FBXL13Q8NEE6 735 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 RNPC3Q96LT9 517 aaKnown RBP9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 RUNDC3BQ96NL0 473 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 THAP2Q9H0W7 228 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 FEZ2Q9UHY8 353 aaPredicted RBP9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 FBXL5Q9UKA1 691 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 LAMB4A4D0S4 1761 aa9.56□□□□□ -0.88
PDLIM5-222ENST00000615540 EIF3DO15371 548 aaKnown RBP eCLIP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 CTNND1O60716 968 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 VCAM1P19320 739 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 PPP2R5EQ16537 467 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 VSIG1Q86XK7 387 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 RFFLQ8WZ73 363 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 LPAR1Q92633 364 aa9.55□□□□□ -0.88
PDLIM5-222ENST00000615540 ERGIC2Q96RQ1 377 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms