RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 RNASELQ05823 741 aaKnown RBP9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 PTPN14Q15678 1187 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 TSGA10IPQ3SY00 556 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 NOMO2Q5JPE7 1267 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 CWF19L1Q69YN2 538 aaKnown RBP9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 CATSPER4Q7RTX7 472 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 TMEM87AQ8NBN3 555 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 SLC22A17Q8WUG5 538 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 RSAD2Q8WXG1 361 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 GCOM2Q9BZD3 368 aaPredicted RBP9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 MINDY3Q9H8M7 445 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 SUCLA2Q9P2R7 463 aaPredicted RBP9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 WRAP73Q9P2S5 460 aaPredicted RBP9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 FSD2A1L4K1 749 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 SPDYE4A6NLX3 237 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 EML1O00423 815 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 SLC37A4O43826 429 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 N4BP1O75113 896 aaKnown RBP9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 CDC45O75419 566 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 EOMESO95936 686 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 POMCP01189 267 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 SPATA31D3P0C874 917 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 CTSAP10619 480 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 RPS6KB1P23443 525 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 PDIA3P30101 505 aaKnown RBP9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 MTHFRP42898 656 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 JAK3P52333 1124 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 AKAP17AQ02040 695 aaKnown RBP9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 ITIH3Q06033 890 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 STK3Q13188 491 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 KRT32Q14532 448 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 KIAA1841Q6NSI8 718 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 BLOC1S2Q6QNY1 142 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 GLB1LQ6UWU2 654 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 AGMOQ6ZNB7 445 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 SPATA31D4Q6ZUB0 917 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 ANO5Q75V66 913 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 TAS1R1Q7RTX1 841 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 CABP7Q86V35 215 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 CCDC12Q8WUD4 166 aaPredicted RBP9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 RABGGTAQ92696 567 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 TMEM143Q96AN5 459 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 KLHL5Q96PQ7 755 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 MRPL9Q9BYD2 267 aaKnown RBP9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 MFSD1Q9H3U5 465 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 GJB4Q9NTQ9 266 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 FAM105AQ9NUU6 356 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 DACT1Q9NYF0 836 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 PRG3Q9Y2Y8 225 aaPredicted RBP9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 IGSF10Q6WRI0 2623 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 COL4A3Q01955 1670 aa9.71□□□□□ -0.86
SHKBP1-220ENST00000599716 SPTA1P02549 2419 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 IGKV6-21A0A0C4DH24 114 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 CCDC196A0A1B0GTZ2 297 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 ZBTB39O15060 712 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 CNPP09543 421 aaKnown RBP9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 SRGAP2CP0DJJ0 459 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 NPR3P17342 541 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 SFPQP23246 707 aaKnown RBP eCLIP9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 KLRC2P26717 231 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 CLCN5P51795 746 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 RCAN1P53805 252 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 ATXN1P54253 815 aaKnown RBP9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 ANGPT1Q15389 498 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 NPY5RQ15761 445 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 XKR3Q5GH77 459 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 ATAT1Q5SQI0 421 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 UBXN11Q5T124 520 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 B3GNT9Q6UX72 402 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 DDX53Q86TM3 631 aaKnown RBP9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 GLYCTKQ8IVS8 523 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 UBALD2Q8IYN6 164 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 ETNPPLQ8TBG4 499 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 B3GALT6Q96L58 329 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 NECTIN4Q96NY8 510 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 RIT2Q99578 217 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 NIFKQ9BYG3 293 aaKnown RBP9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 IFT122Q9HBG6 1241 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 CACNG4Q9UBN1 327 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 KCNJ14Q9UNX9 436 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 HES2Q9Y543 173 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 PCDHB2Q9Y5E7 798 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 NID2Q14112 1375 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 DOCK6Q96HP0 2047 aa9.7□□□□□ -0.86
SHKBP1-220ENST00000599716 NRP1O14786 923 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 MAFO75444 373 aaPredicted RBP9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 RFPL2O75678 378 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 CFHP08603 1231 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 IFNAR1P17181 557 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 SFNP31947 248 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 HSPA4P34932 840 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 USP11P51784 963 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 CLCN4P51793 760 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 AK2P54819 239 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 TOB2Q14106 344 aaPredicted RBP9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 INF2Q27J81 1249 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 LETM2Q2VYF4 491 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 POTEGQ6S5H5 508 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 GPR149Q86SP6 731 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 TEX2Q8IWB9 1127 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms