RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TCF25Q9BQ70 676 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 LLPHQ9BRT6 129 aaKnown RBP11.68□□□□□ -0.54
LIG1-213ENST00000596672 APOL5Q9BWW9 433 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 ANKEF1Q9NU02 776 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 DACT1Q9NYF0 836 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 SPG21Q9NZD8 308 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 INPP5FQ9Y2H2 1132 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 PCDHB6Q9Y5E3 794 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 TDRD15B5MCY1 1934 aaKnown RBP11.68□□□□□ -0.54
LIG1-213ENST00000596672 PP2D1A8MPX8 630 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 GPR37L1O60883 481 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 LILRB3O75022 631 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 CLASP2O75122 1294 aaKnown RBP11.67□□□□□ -0.54
LIG1-213ENST00000596672 ARF4P18085 180 aaPredicted RBP11.67□□□□□ -0.54
LIG1-213ENST00000596672 IGFBP6P24592 240 aaPredicted RBP11.67□□□□□ -0.54
LIG1-213ENST00000596672 U2AF2P26368 475 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIG1-213ENST00000596672 SSTR3P32745 418 aaPredicted RBP11.67□□□□□ -0.54
LIG1-213ENST00000596672 CDC42EP1Q00587 391 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 PUS10Q3MIT2 529 aaKnown RBP11.67□□□□□ -0.54
LIG1-213ENST00000596672 LLGL2Q6P1M3 1020 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 TMEM184AQ6ZMB5 413 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 MAEAQ7L5Y9 396 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 IGSF21Q96ID5 467 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 ZBP1Q9H171 429 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 POLR3FQ9H1D9 316 aaPredicted RBP11.67□□□□□ -0.54
LIG1-213ENST00000596672 FOXP1Q9H334 677 aaPredicted RBP11.67□□□□□ -0.54
LIG1-213ENST00000596672 BRMS1Q9HCU9 246 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 AAASQ9NRG9 546 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 MARCH5Q9NX47 278 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 CACNG4Q9UBN1 327 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 PPME1Q9Y570 386 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 IPPQ9Y573 584 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 PLXNA3P51805 1871 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 C2orf16Q68DN1 1984 aa11.67□□□□□ -0.54
LIG1-213ENST00000596672 WDR87Q6ZQQ6 2873 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 LOC730098B7Z3J9 87 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 INPPL1O15357 1258 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 HOXA2O43364 376 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 USO1O60763 962 aaKnown RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 DKC1O60832 514 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIG1-213ENST00000596672 ZC3H11AO75152 810 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIG1-213ENST00000596672 POMCP01189 267 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 WEE2P0C1S8 567 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 OR52Z1P0C646 297 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 NCLP19338 710 aaKnown RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 CDC25AP30304 524 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 TTC38Q5R3I4 469 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 ANKRD54Q6NXT1 300 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 OTUD6AQ7L8S5 288 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 KCNK18Q7Z418 384 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 RNF135Q8IUD6 432 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 NOSTRINQ8IVI9 506 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 ABI1Q8IZP0 508 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 C12orf76Q8N812 135 aaPredicted RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 SLC22A17Q8WUG5 538 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 ZSCAN31Q96LW9 406 aaPredicted RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 ZFP42Q96MM3 310 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 GAD1Q99259 594 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 JPH2Q9BR39 696 aaPredicted RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 MMTAG2Q9BU76 263 aaKnown RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 POLR3CQ9BUI4 534 aaPredicted RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 INO80BQ9C086 356 aaPredicted RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 GBP3Q9H0R5 595 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 NXF3Q9H4D5 531 aaKnown RBP11.66□□□□□ -0.54
LIG1-213ENST00000596672 PRKAG3Q9UGI9 489 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 MUTYHQ9UIF7 546 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 HCFC2Q9Y5Z7 792 aa11.66□□□□□ -0.54
LIG1-213ENST00000596672 DOCK8Q8NF50 2099 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 ASAP2O43150 1006 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 DGAT1O75907 488 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 CXCL14O95715 111 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 XRCC6P12956 609 aaKnown RBP eCLIP11.65□□□□□ -0.54
LIG1-213ENST00000596672 EPCAMP16422 314 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 RPA1P27694 616 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 POU5F1BQ06416 359 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 TRIM29Q14134 588 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 CBX2Q14781 532 aaPredicted RBP11.65□□□□□ -0.54
LIG1-213ENST00000596672 CSPP1Q1MSJ5 1256 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 EEF1DP3Q658K8 133 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 TMC7Q7Z402 723 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 COLGALT2Q8IYK4 626 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 DAW1Q8N136 415 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 VPS52Q8N1B4 723 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 LRRC15Q8TF66 581 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 TCP11Q8WWU5 503 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 RABGGTAQ92696 567 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 TMX3Q96JJ7 454 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 KIFC3Q9BVG8 833 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 C1QTNF1Q9BXJ1 281 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 FZD8Q9H461 694 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 TUFT1Q9NNX1 390 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 ENTPD7Q9NQZ7 604 aa11.65□□□□□ -0.54
LIG1-213ENST00000596672 DBR1Q9UK59 544 aaKnown RBP11.65□□□□□ -0.54
LIG1-213ENST00000596672 VWA8A3KMH1 1905 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 ARL5CA6NH57 179 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 INO80B-WBP1J3KQ70 363 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 NRP1O14786 923 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 GAS2O43903 313 aaKnown RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 AKAP5P24588 427 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 PPM1AP35813 382 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms