RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 PTPN21Q16825 1174 aa6.4□□□□□ -1.38
NUP88-208ENST00000574087 MBNL2Q5VZF2 373 aaKnown RBP6.4□□□□□ -1.38
NUP88-208ENST00000574087 BTNL9Q6UXG8 535 aa6.4□□□□□ -1.38
NUP88-208ENST00000574087 LIMS2Q7Z4I7 341 aa6.4□□□□□ -1.38
NUP88-208ENST00000574087 ADGRE4PQ86SQ3 457 aa6.4□□□□□ -1.38
NUP88-208ENST00000574087 GPR135Q8IZ08 494 aa6.4□□□□□ -1.38
NUP88-208ENST00000574087 MSL3Q8N5Y2 521 aaKnown RBP6.4□□□□□ -1.38
NUP88-208ENST00000574087 JADE3Q92613 823 aa6.4□□□□□ -1.38
NUP88-208ENST00000574087 PAWRQ96IZ0 340 aaKnown RBP6.4□□□□□ -1.38
NUP88-208ENST00000574087 RPL10LQ96L21 214 aaKnown RBP6.4□□□□□ -1.38
NUP88-208ENST00000574087 GNRHR2Q96P88 292 aa6.4□□□□□ -1.38
NUP88-208ENST00000574087 SMAD5Q99717 465 aaKnown RBP6.4□□□□□ -1.38
NUP88-208ENST00000574087 C12orf65Q9H3J6 166 aaKnown RBP6.4□□□□□ -1.38
NUP88-208ENST00000574087 AGO3Q9H9G7 860 aaKnown RBP6.4□□□□□ -1.38
NUP88-208ENST00000574087 ING3Q9NXR8 418 aa6.4□□□□□ -1.38
NUP88-208ENST00000574087 CDC14BO60729 498 aa6.39□□□□□ -1.39
NUP88-208ENST00000574087 JUNP05412 331 aaKnown RBP6.39□□□□□ -1.39
NUP88-208ENST00000574087 CTSSP25774 331 aa6.39□□□□□ -1.39
NUP88-208ENST00000574087 C19orf54Q5BKX5 351 aa6.39□□□□□ -1.39
NUP88-208ENST00000574087 GLB1LQ6UWU2 654 aa6.39□□□□□ -1.39
NUP88-208ENST00000574087 ABHD15Q6UXT9 468 aa6.39□□□□□ -1.39
NUP88-208ENST00000574087 GLB1L3Q8NCI6 653 aaPredicted RBP6.39□□□□□ -1.39
NUP88-208ENST00000574087 SHCBP1Q8NEM2 672 aa6.39□□□□□ -1.39
NUP88-208ENST00000574087 ACE2Q9BYF1 805 aaPredicted RBP6.39□□□□□ -1.39
NUP88-208ENST00000574087 ARID1BQ8NFD5 2236 aaPredicted RBP6.38□□□□□ -1.39
NUP88-208ENST00000574087 KLHL33A6NCF5 533 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 NEK2P51955 445 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 MALLQ13021 153 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 RIN1Q13671 783 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 CLUL1Q15846 466 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 TCTN3Q6NUS6 607 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 SNX33Q8WV41 574 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 SLC2A13Q96QE2 648 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 BDH2Q9BUT1 245 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 PLA2G12BQ9BX93 195 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 NELFAQ9H3P2 528 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 GREM2Q9H772 168 aa6.38□□□□□ -1.39
NUP88-208ENST00000574087 RPTORQ8N122 1335 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 ALDH1L1O75891 902 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 RPS19P39019 145 aaKnown RBP6.37□□□□□ -1.39
NUP88-208ENST00000574087 WNT3AP56704 352 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 PPP3CAQ08209 521 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 ODF1Q14990 250 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 PLEKHG6Q3KR16 790 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 MUM1L1Q5H9M0 696 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 KRT40Q6A162 431 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 CIR1Q86X95 450 aaPredicted RBP6.37□□□□□ -1.39
NUP88-208ENST00000574087 CMTM4Q8IZR5 234 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 GIMAP8Q8ND71 665 aaPredicted RBP6.37□□□□□ -1.39
NUP88-208ENST00000574087 DNERQ8NFT8 737 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 RIN2Q8WYP3 895 aaPredicted RBP6.37□□□□□ -1.39
NUP88-208ENST00000574087 RELTQ969Z4 430 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 CHMP4CQ96CF2 233 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 CEP89Q96ST8 783 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 ENKD1Q9H0I2 346 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 CNOT11Q9UKZ1 510 aaKnown RBP6.37□□□□□ -1.39
NUP88-208ENST00000574087 MRFAP1Q9Y605 127 aa6.37□□□□□ -1.39
NUP88-208ENST00000574087 PATE3B3GLJ2 98 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 FOXS1O43638 330 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 FOXD2O60548 495 aaPredicted RBP6.36□□□□□ -1.39
NUP88-208ENST00000574087 RAD17O75943 681 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 C5AR1P21730 350 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 MCAMP43121 646 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 FUKQ8N0W3 1084 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 LILRA3Q8N6C8 439 aaPredicted RBP6.36□□□□□ -1.39
NUP88-208ENST00000574087 GPR156Q8NFN8 814 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 TEKT5Q96M29 485 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 KRTAP9-9Q9BYP9 154 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 KRTAP9-4Q9BYQ2 154 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 IL23AQ9NPF7 189 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 TLR9Q9NR96 1032 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 TUBD1Q9UJT1 453 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 ZFR2Q9UPR6 939 aaKnown RBP6.36□□□□□ -1.39
NUP88-208ENST00000574087 SLC30A1Q9Y6M5 507 aa6.36□□□□□ -1.39
NUP88-208ENST00000574087 A0A1W2PRX2 142 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 UBE2QL1A1L167 161 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 XPOTO43592 962 aaKnown RBP6.35□□□□□ -1.39
NUP88-208ENST00000574087 PRAMEF4O60810 478 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 PHF2O75151 1096 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 NDUFS2O75306 463 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 PLP2Q04941 152 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 ACAP2Q15057 778 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 TTF1Q15361 905 aaPredicted RBP6.35□□□□□ -1.39
NUP88-208ENST00000574087 LILRA6Q6PI73 481 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 ZBTB46Q86UZ6 589 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 PNMA8AQ86V59 439 aaPredicted RBP6.35□□□□□ -1.39
NUP88-208ENST00000574087 HOXB13Q92826 284 aaPredicted RBP6.35□□□□□ -1.39
NUP88-208ENST00000574087 OR14A2Q96R54 314 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 DMRT3Q9NQL9 472 aa6.35□□□□□ -1.39
NUP88-208ENST00000574087 RBM12Q9NTZ6 932 aaKnown RBP6.35□□□□□ -1.39
NUP88-208ENST00000574087 NRP1O14786 923 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 AKR1B10O60218 316 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 SYN1P17600 705 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 CCND1P24385 295 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 RECQLP46063 649 aaPredicted RBP6.34□□□□□ -1.39
NUP88-208ENST00000574087 MCL1Q07820 350 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 ICAM4Q14773 271 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 GRM7Q14831 915 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 MST1LQ2TV78 715 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 GJC2Q5T442 439 aaPredicted RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms