RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 C4orf19Q8IY42 314 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 ATP6V0A1Q93050 837 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 TMEM117Q9H0C3 514 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 DMAC2Q9NW81 257 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 L1RE1Q9UN81 338 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 FAN1Q9Y2M0 1017 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 AFG3L2Q9Y4W6 797 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 SNCAIPQ9Y6H5 919 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 BRCA1P38398 1863 aaKnown RBP10.76□□□□□ -0.69
VPS53-206ENST00000570359 PFASO15067 1338 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 CYP26A1O43174 497 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 SGPL1O95470 568 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 LMNB1P20700 586 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 GUCY2DQ02846 1103 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 MKRN4PQ13434 485 aaPredicted RBP10.76□□□□□ -0.69
VPS53-206ENST00000570359 TERF2Q15554 542 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 CFAP221Q4G0U5 840 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 NIPA1Q7RTP0 329 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 TXLNBQ8N3L3 684 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 TMEM161BQ8NDZ6 487 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 GOLGA5Q8TBA6 731 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 SEMA4DQ92854 862 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 ZBTB45Q96K62 511 aaPredicted RBP10.76□□□□□ -0.69
VPS53-206ENST00000570359 STK33Q9BYT3 514 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 GPR88Q9GZN0 384 aa10.76□□□□□ -0.69
VPS53-206ENST00000570359 SFNP31947 248 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 CETN1Q12798 172 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 LY6KQ17RY6 165 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 GNPTABQ3T906 1256 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 INTS8Q75QN2 995 aaKnown RBP10.75□□□□□ -0.69
VPS53-206ENST00000570359 OTUD6AQ7L8S5 288 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 RPUSD2Q8IZ73 545 aaKnown RBP10.75□□□□□ -0.69
VPS53-206ENST00000570359 GPC2Q8N158 579 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.75□□□□□ -0.69
VPS53-206ENST00000570359 TAS1R2Q8TE23 839 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 CTNNBL1Q8WYA6 563 aaPredicted RBP10.75□□□□□ -0.69
VPS53-206ENST00000570359 BTBD6Q96KE9 485 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 INPP4AQ96PE3 977 aaPredicted RBP10.75□□□□□ -0.69
VPS53-206ENST00000570359 SGIP1Q9BQI5 828 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 SELENOOQ9BVL4 669 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 TRIM31Q9BZY9 425 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 HOXC10Q9NYD6 342 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 ZNF112Q9UJU3 913 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 C19orf81C9J6K1 198 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 HSP90B2PQ58FF3 399 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 DNAJC21Q5F1R6 531 aaKnown RBP10.75□□□□□ -0.69
VPS53-206ENST00000570359 C1orf220Q5T0J3 134 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 MEI1Q5TIA1 1274 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 AADACL2Q6P093 401 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 SLC47A2Q86VL8 602 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 CDR2LQ86X02 465 aaPredicted RBP10.75□□□□□ -0.69
VPS53-206ENST00000570359 CPNE8Q86YQ8 564 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 SLC35G2Q8TBE7 412 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 MKNK1Q9BUB5 465 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 EPB41L5Q9HCM4 733 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 XPNPEP1Q9NQW7 623 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 CYP26B1Q9NR63 512 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 FAM53CQ9NYF3 392 aa10.75□□□□□ -0.69
VPS53-206ENST00000570359 UBE4BO95155 1302 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 MYH9P35579 1960 aaKnown RBP10.74□□□□□ -0.69
VPS53-206ENST00000570359 HEXIM1O94992 359 aaKnown RBP10.74□□□□□ -0.69
VPS53-206ENST00000570359 LMAN1P49257 510 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 LIG4P49917 911 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 BIRC3Q13489 604 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 STXBP2Q15833 593 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 ZBTB41Q5SVQ8 909 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 TMEM63BQ5T3F8 832 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 SPOPLQ6IQ16 392 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 SLC39A4Q6P5W5 647 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 ZBTB33Q86T24 672 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 RNF10Q8N5U6 811 aaKnown RBP10.74□□□□□ -0.69
VPS53-206ENST00000570359 TPCN2Q8NHX9 752 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 SLC30A5Q8TAD4 765 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 GPRASP2Q96D09 838 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 ZNF302Q9NR11 478 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 CTTNBP2NLQ9P2B4 639 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 BZW2Q9Y6E2 419 aaKnown RBP10.74□□□□□ -0.69
VPS53-206ENST00000570359 BUB1BO60566 1050 aaPredicted RBP10.74□□□□□ -0.69
VPS53-206ENST00000570359 EIF3JO75822 258 aaKnown RBP10.74□□□□□ -0.69
VPS53-206ENST00000570359 GLI1P08151 1106 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 ITGA4P13612 1032 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 TNNI1P19237 187 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 MUTP22033 750 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 GTF2BQ00403 316 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 DRP2Q13474 957 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 HLTFQ14527 1009 aaKnown RBP eCLIP10.74□□□□□ -0.69
VPS53-206ENST00000570359 EMC2Q15006 297 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 PPP2R5AQ15172 486 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 MIS18BP1Q6P0N0 1132 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 TATDN2Q93075 761 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 IFT74Q96LB3 600 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 STRA6Q9BX79 667 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 DDX47Q9H0S4 455 aaKnown RBP10.74□□□□□ -0.69
VPS53-206ENST00000570359 RABEP2Q9H5N1 569 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 ATP6V0A4Q9HBG4 840 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 NFU1Q9UMS0 254 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 DNAH12Q6ZR08 3092 aa10.74□□□□□ -0.69
VPS53-206ENST00000570359 CCDC66A2RUB6 948 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 KIF4AO95239 1232 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 DDX42Q86XP3 938 aaKnown RBP eCLIP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms