RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SLC7A5Q01650 507 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 IFI16Q16666 785 aaKnown RBP21.99■■□□□ 1.11
CLN3-230ENST00000568076 GNPTABQ3T906 1256 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 MAP9Q49MG5 647 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 PALB2Q86YC2 1186 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 ZNF526Q8TF50 670 aaPredicted RBP21.99■■□□□ 1.11
CLN3-230ENST00000568076 SEPT9Q9UHD8 586 aaPredicted RBP21.99■■□□□ 1.11
CLN3-230ENST00000568076 TMCO5BA8MYB1 307 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 PMM2O15305 246 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 DKC1O60832 514 aaKnown RBP eCLIP21.99■■□□□ 1.11
CLN3-230ENST00000568076 DGAT1O75907 488 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 DDNO94850 711 aaPredicted RBP21.99■■□□□ 1.11
CLN3-230ENST00000568076 ZBTB48P10074 688 aaPredicted RBP21.99■■□□□ 1.11
CLN3-230ENST00000568076 MXI1P50539 228 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 CETN1Q12798 172 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 RPS6KA1Q15418 735 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 PTPROQ16827 1216 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 CCDC70Q6NSX1 233 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 LBX2Q6XYB7 198 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 SLFN11Q7Z7L1 901 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 KAT5Q92993 513 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 MAF1Q9H063 256 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 C17orf75Q9HAS0 396 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 CYP26B1Q9NR63 512 aa21.99■■□□□ 1.11
CLN3-230ENST00000568076 CCDC172P0C7W6 258 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 FMNL3Q8IVF7 1028 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 CHST13Q8NET6 341 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 TAS2R14Q9NYV8 317 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 BTBD7Q9P203 1132 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 IGSF9BQ9UPX0 1349 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 SUPT20HL2P0C7V6 817 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 ATP4AP20648 1035 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 TAS1R3Q7RTX0 852 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 SLC20A1Q8WUM9 679 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 GDAP1L1Q96MZ0 367 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 STXBP5LQ9Y2K9 1186 aa21.98■■□□□ 1.11
CLN3-230ENST00000568076 NCANO14594 1321 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 PTPRFP10586 1907 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 KCNK3O14649 394 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 EIF3JO75822 258 aaKnown RBP21.97■■□□□ 1.11
CLN3-230ENST00000568076 TMEM253P0C7T8 217 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 RNASE9P60153 205 aaKnown RBP21.97■■□□□ 1.11
CLN3-230ENST00000568076 STXBP2Q15833 593 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 MIS18BP1Q6P0N0 1132 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 CYFIP1Q7L576 1253 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 ANKRD35Q8N283 1001 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 MCPH1Q8NEM0 835 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 DNERQ8NFT8 737 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 PARD3BQ8TEW8 1205 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 AENQ8WTP8 325 aaKnown RBP21.97■■□□□ 1.11
CLN3-230ENST00000568076 RUBCNQ92622 972 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 SEMA4DQ92854 862 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 POP1Q99575 1024 aaKnown RBP21.97■■□□□ 1.11
CLN3-230ENST00000568076 ATP6V0A4Q9HBG4 840 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 OSGEPQ9NPF4 335 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 USP20Q9Y2K6 914 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 PAPPA2Q9BXP8 1791 aa21.97■■□□□ 1.11
CLN3-230ENST00000568076 FAM170AA1A519 330 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 ADM5C9JUS6 153 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 CES2O00748 559 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 TNFAIP3P21580 790 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 ICAM3P32942 547 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 TNNT3P45378 269 aaPredicted RBP21.96■■□□□ 1.11
CLN3-230ENST00000568076 RTP1P59025 263 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 MAP2K1Q02750 393 aaPredicted RBP21.96■■□□□ 1.11
CLN3-230ENST00000568076 C8orf74Q6P047 294 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 TAF4BQ92750 862 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 CCDC127Q96BQ5 260 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 FBXL18Q96ME1 805 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 AGPAT1Q99943 283 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 SELENOOQ9BVL4 669 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.96■■□□□ 1.116e-9■■■■■ 134.6
CLN3-230ENST00000568076 STIM2Q9P246 746 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 MTERF2Q49AM1 385 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 XKR3Q5GH77 459 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 POLR3FQ9H1D9 316 aaPredicted RBP21.96■■□□□ 1.11
CLN3-230ENST00000568076 VIPAS39Q9H9C1 493 aa21.96■■□□□ 1.11
CLN3-230ENST00000568076 SYNGAP1Q96PV0 1343 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 ZC3H4Q9UPT8 1303 aaKnown RBP21.95■■□□□ 1.1
CLN3-230ENST00000568076 A0A0G2JMZ2 1700 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 ATG7O95352 703 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 ABCB4P21439 1286 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 ALDH5A1P51649 535 aaPredicted RBP21.95■■□□□ 1.1
CLN3-230ENST00000568076 GLE1Q53GS7 698 aaKnown RBP21.95■■□□□ 1.1
CLN3-230ENST00000568076 USP38Q8NB14 1042 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 SLC35G2Q8TBE7 412 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 RFFLQ8WZ73 363 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 ARHGEF26Q96DR7 871 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 MFSD14AQ96MC6 490 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 KREMEN1Q96MU8 473 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 TOPORSQ9NS56 1045 aaPredicted RBP21.95■■□□□ 1.1
CLN3-230ENST00000568076 ARHGAP28Q9P2N2 729 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 HPCAL4Q9UM19 191 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 OTOFQ9HC10 1997 aa21.95■■□□□ 1.1
CLN3-230ENST00000568076 GYS2P54840 703 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 SEPT14Q6ZU15 432 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 NT5DC3Q86UY8 548 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 LMBR1Q8WVP7 490 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 POMGNT1Q8WZA1 660 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 THAP2Q9H0W7 228 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms