RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CATSPERGQ6ZRH7 1159 aa14.33□□□□□ -0.11
VPS4A-204ENST00000566354 DDX42Q86XP3 938 aaKnown RBP eCLIP14.33□□□□□ -0.11
VPS4A-204ENST00000566354 ETNPPLQ8TBG4 499 aa14.33□□□□□ -0.11
VPS4A-204ENST00000566354 SEC14L1Q92503 715 aa14.33□□□□□ -0.11
VPS4A-204ENST00000566354 RAVER2Q9HCJ3 691 aaKnown RBP14.33□□□□□ -0.11
VPS4A-204ENST00000566354 VWA5AO00534 786 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 NR3C1P04150 777 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 ICAM1P05362 532 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 FERP16591 822 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 HOXA13P31271 388 aaPredicted RBP14.33□□□□□ -0.12
VPS4A-204ENST00000566354 GJA5P36382 358 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 PSMC6P62333 389 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 PABPC4Q13310 644 aaKnown RBP eCLIP14.33□□□□□ -0.129e-8■■□□□ 14
VPS4A-204ENST00000566354 TCERG1LQ5VWI1 586 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 NT5DC3Q86UY8 548 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 CRYGNQ8WXF5 182 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 SLC35C1Q96A29 364 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 HES6Q96HZ4 224 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 TACO1Q9BSH4 297 aaKnown RBP14.33□□□□□ -0.12
VPS4A-204ENST00000566354 SIX2Q9NPC8 291 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 SLC12A6Q9UHW9 1150 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 CCPG1Q9ULG6 757 aa14.33□□□□□ -0.12
VPS4A-204ENST00000566354 TTC7AQ9ULT0 858 aaPredicted RBP14.33□□□□□ -0.12
VPS4A-204ENST00000566354 A0A0G2JLL6 359 aaPredicted RBP14.32□□□□□ -0.12
VPS4A-204ENST00000566354 KLHL33A6NCF5 533 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 GMNCA6NCL1 334 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 SPATA31C1P0DKV0 1188 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 ARHGAP4P98171 946 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 DRP2Q13474 957 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 Q4G0T1 1027 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 GADL1Q6ZQY3 521 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 PRRT2Q7Z6L0 340 aaPredicted RBP14.32□□□□□ -0.12
VPS4A-204ENST00000566354 DAAM2Q86T65 1068 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 NEUROG2Q9H2A3 272 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 FAM114A2Q9NRY5 505 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 AMACRQ9UHK6 382 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 MYO1FO00160 1098 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 DDX3XO00571 662 aaKnown RBP eCLIP14.32□□□□□ -0.12
VPS4A-204ENST00000566354 DAPK3O43293 454 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 CFBP00751 764 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 DSG3P32926 999 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 PPIL2Q13356 520 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 COG2Q14746 738 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 C11orf91Q3C1V1 193 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 PRR16Q569H4 304 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 KCNV1Q6PIU1 500 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 C6orf89Q6UWU4 347 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 OR2W6PQ8NHA6 318 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 UBLCP1Q8WVY7 318 aaPredicted RBP14.32□□□□□ -0.12
VPS4A-204ENST00000566354 CABS1Q96KC9 395 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 FAM20AQ96MK3 541 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 GBA2Q9HCG7 927 aaPredicted RBP14.32□□□□□ -0.12
VPS4A-204ENST00000566354 PPANQ9NQ55 473 aaKnown RBP14.32□□□□□ -0.12
VPS4A-204ENST00000566354 GCNT4Q9P109 453 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 AMFRQ9UKV5 643 aa14.32□□□□□ -0.12
VPS4A-204ENST00000566354 UTP11Q9Y3A2 253 aaKnown RBP14.32□□□□□ -0.12
VPS4A-204ENST00000566354 MEIS1O00470 390 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 ITGBL1O95965 494 aaPredicted RBP14.31□□□□□ -0.12
VPS4A-204ENST00000566354 STAT1P42224 750 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 PLCB4Q15147 1175 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 ODF2Q5BJF6 829 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 RNF187Q5TA31 235 aaPredicted RBP14.31□□□□□ -0.12
VPS4A-204ENST00000566354 SLC10A4Q96EP9 437 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 CYFIP2Q96F07 1278 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 SGSM3Q96HU1 749 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 HOMER2Q9NSB8 354 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 KCNH4Q9UQ05 1017 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 DIS3Q9Y2L1 958 aaKnown RBP14.31□□□□□ -0.12
VPS4A-204ENST00000566354 ASTN1O14525 1302 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 LOC285556D6RIA3 1793 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 CXCL11O14625 94 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 TRAPPC3O43617 180 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 ALAS1P13196 640 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 ITGA4P13612 1032 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 MNAT1P51948 309 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 PPP2R2AP63151 447 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 IFT88Q13099 833 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 PPP2R5EQ16537 467 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 PTPROQ16827 1216 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 CST9Q5W186 159 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 TMC3Q7Z5M5 1100 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 DNAAF5Q86Y56 855 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 U2AF1L4Q8WU68 220 aaKnown RBP14.31□□□□□ -0.12
VPS4A-204ENST00000566354 CXorf56Q9H5V9 222 aa14.31□□□□□ -0.12
VPS4A-204ENST00000566354 AJAP1Q9UKB5 411 aaPredicted RBP14.31□□□□□ -0.12
VPS4A-204ENST00000566354 CCDC189A1A4V9 331 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 SPDYE16A6NNV3 312 aaPredicted RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 NFIBO00712 420 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 TTI1O43156 1089 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 PEX10O60683 326 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 ZBED4O75132 1171 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 TBCAO75347 108 aaKnown RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 FLT3P36888 993 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 CASP4P49662 377 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 VASPP50552 380 aaPredicted RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 GALCP54803 685 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 ACTN3Q08043 901 aaPredicted RBP14.3□□□□□ -0.12
VPS4A-204ENST00000566354 TRAF1Q13077 416 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 SPDYCQ5MJ68 293 aa14.3□□□□□ -0.12
VPS4A-204ENST00000566354 CHADLQ6NUI6 762 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms