RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-218ENST00000566029 LGALS13Q9UHV8 139 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 PI4KAP2A4QPH2 592 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 EDF1O60869 148 aaKnown RBP3.12□□□□□ -1.91
CHD9-218ENST00000566029 HOXA10P31260 410 aaPredicted RBP3.12□□□□□ -1.91
CHD9-218ENST00000566029 IFNAR2P48551 515 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 AP1B1Q10567 949 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 NAB2Q15742 525 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 ZC3H12BQ5HYM0 836 aaKnown RBP3.12□□□□□ -1.91
CHD9-218ENST00000566029 DPY19L2P1Q6NXN4 242 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 DHRS4L2Q6PKH6 230 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 ZDHHC24Q6UX98 284 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 TTC5Q8N0Z6 440 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 PI4KAP1Q8N8J0 262 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 SYT2Q8N9I0 419 aaPredicted RBP3.12□□□□□ -1.91
CHD9-218ENST00000566029 ERMNQ8TAM6 284 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 NKX2-3Q8TAU0 364 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 DEPTORQ8TB45 409 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 MCCC1Q96RQ3 725 aaPredicted RBP3.12□□□□□ -1.91
CHD9-218ENST00000566029 DDX47Q9H0S4 455 aaKnown RBP3.12□□□□□ -1.91
CHD9-218ENST00000566029 STOML1Q9UBI4 398 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 SYNPO2Q9UMS6 1093 aa3.12□□□□□ -1.91
CHD9-218ENST00000566029 BOLA2-SMG1P6H3BVE0 249 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 FGFR1OPO95684 399 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 AFMP43652 599 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 ATP11AP98196 1134 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 RFWD3Q6PCD5 774 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 DSTYKQ6XUX3 929 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 RALYLQ86SE5 291 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 EFHBQ8N7U6 833 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 LRRC8CQ8TDW0 803 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 DQX1Q8TE96 717 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 HIC2Q96JB3 615 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.11□□□□□ -1.913e-6■■■□□ 19.2
CHD9-218ENST00000566029 RBM38Q9H0Z9 239 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 CCDC162PA2VCL2 907 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 H7C1D1 291 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 ZW10O43264 779 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 DAPK3O43293 454 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 KLHL18O94889 574 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 PDE6CP51160 858 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 RPL26P61254 145 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 TEFQ10587 303 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 COBLL1Q53SF7 1204 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 DUS1LQ6P1R4 473 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 RAB3IL1Q8TBN0 382 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 NEK9Q8TD19 979 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 PPP2R3CQ969Q6 453 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 SIKE1Q9BRV8 207 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 ETNK1Q9HBU6 452 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 FANCFQ9NPI8 374 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 DSEQ9UL01 958 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 METP08581 1390 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 STAMBPO95630 424 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 CTNNA2P26232 953 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 VHLP40337 213 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 FAM47EQ6ZV65 393 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 USHBP1Q8N6Y0 703 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 FAM81BQ96LP2 452 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 CADM1Q9BY67 442 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 XAB2Q9HCS7 855 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 CHMP2BQ9UQN3 213 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 hCG_1642624A0A1W2PR95 340 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 GSTT2P0CG29 244 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 GSTT2BP0CG30 244 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 CDK4P11802 303 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 HOXD12P35452 270 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 KLK7P49862 253 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 SSRP1Q08945 709 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 MAP7Q14244 749 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 FSCBQ5H9T9 825 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 SNRNP48Q6IEG0 339 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 TRMT10CQ7L0Y3 403 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 SYN2Q92777 582 aaPredicted RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 GRAMD1AQ96CP6 724 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 CATSPER2Q96P56 530 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 RAB3IPQ96QF0 476 aaPredicted RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 GIMAP4Q9NUV9 329 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 PTTG2Q9NZH5 202 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 ATP8B3O60423 1300 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 NPM3O75607 178 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 UNC5CO95185 931 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 DNA2P51530 1060 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 HDAC4P56524 1084 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 PTPN12Q05209 780 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 CETN1Q12798 172 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 DDB1Q16531 1140 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 HELBQ8NG08 1087 aaPredicted RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 COQ7Q99807 217 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 ZMYND8Q9ULU4 1186 aaPredicted RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 ATP6V0A2Q9Y487 856 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 NKRFO15226 690 aaKnown RBP eCLIP3.11□□□□□ -1.911e-6■■□□□ 11.6
CHD9-218ENST00000566029 AKR1B10O60218 316 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 SLC34A1Q06495 639 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 TBL3Q12788 808 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 GSTA3Q16772 222 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 LLGL2Q6P1M3 1020 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 APOA5Q6Q788 366 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 DDX46Q7L014 1031 aaKnown RBP3.11□□□□□ -1.91
CHD9-218ENST00000566029 WDR60Q8WVS4 1066 aa3.11□□□□□ -1.91
CHD9-218ENST00000566029 VTI1AQ96AJ9 217 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms