RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 COL4A6Q14031 1691 aa10.72□□□□□ -0.69
SPG11-214ENST00000558989 PRUNE2Q8WUY3 3088 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 TRIP11Q15643 1979 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 C9IYK1 514 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 DGAT1O75907 488 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 SSBP05455 408 aaKnown RBP eCLIP10.71□□□□□ -0.69
SPG11-214ENST00000558989 PDCP20941 246 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 SFPQP23246 707 aaKnown RBP eCLIP10.71□□□□□ -0.69
SPG11-214ENST00000558989 RPA1P27694 616 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 ERVK-21P61565 698 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 TAGLNQ01995 201 aaKnown RBP10.71□□□□□ -0.69
SPG11-214ENST00000558989 EPC2Q52LR7 807 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 KRT79Q5XKE5 535 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 TWF2Q6IBS0 349 aaKnown RBP10.71□□□□□ -0.69
SPG11-214ENST00000558989 SLC24A5Q71RS6 500 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 TMEM192Q8IY95 271 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 STK32AQ8WU08 396 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 LPPQ93052 612 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 SGSM3Q96HU1 749 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 PKNOX2Q96KN3 472 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 RAB34Q9BZG1 259 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 BHMT2Q9H2M3 363 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 IFT122Q9HBG6 1241 aa10.71□□□□□ -0.69
SPG11-214ENST00000558989 MRPL42Q9Y6G3 142 aaKnown RBP10.71□□□□□ -0.69
SPG11-214ENST00000558989 TDRD15B5MCY1 1934 aaKnown RBP10.71□□□□□ -0.7
SPG11-214ENST00000558989 LRRIQ4A6NIV6 560 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 INO80B-WBP1J3KQ70 363 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 LPXNO60711 386 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 LYPLA2O95372 231 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 PRR29P0C7W0 189 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 SOX11P35716 441 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 SERPINB4P48594 390 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 ATP2C1P98194 919 aaPredicted RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 GRIN1Q05586 938 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 VAC14Q08AM6 782 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 RAD51AP2Q09MP3 1159 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 GPM6BQ13491 265 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 CAPSQ13938 189 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 DSC3Q14574 896 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 PADI6Q6TGC4 694 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 ZNF410Q86VK4 478 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 CDR2LQ86X02 465 aaPredicted RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 IGSF22Q8N9C0 903 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 SP7Q8TDD2 431 aaPredicted RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 CPB2Q96IY4 423 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 INO80BQ9C086 356 aaPredicted RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 C1orf112Q9NSG2 853 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 CLIC4Q9Y696 253 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 MTCH2Q9Y6C9 303 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 GPR37L1O60883 481 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 AP1G2O75843 785 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 GLRA2P23416 452 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 MARCKSP29966 332 aaPredicted RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 RESTQ13127 1097 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 DHX8Q14562 1220 aaKnown RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 SPECC1Q5M775 1068 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 BRAPQ7Z569 592 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 HELQQ8TDG4 1101 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 ZNF689Q96CS4 500 aaPredicted RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 INTS4Q96HW7 963 aaKnown RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 NAP1L5Q96NT1 182 aaPredicted RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 RC3H2Q9HBD1 1191 aaKnown RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 ALG13Q9NP73 1137 aaKnown RBP10.7□□□□□ -0.7
SPG11-214ENST00000558989 USP20Q9Y2K6 914 aa10.7□□□□□ -0.7
SPG11-214ENST00000558989 MEIS3P2A8K0S8 358 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 LAD1O00515 517 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 STX6O43752 255 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 ERLIN2O94905 339 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 PBX3P40426 434 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 PRPHP41219 470 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 PHKA2P46019 1235 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 CDC42EP1Q00587 391 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 TCHHQ07283 1943 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 TFDP1Q14186 410 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 PDIA5Q14554 519 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 EP400NLQ6ZTU2 488 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 KCNK18Q7Z418 384 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 ECHDC2Q86YB7 292 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 ABI1Q8IZP0 508 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 RASSF8Q8NHQ8 419 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 SNX21Q969T3 373 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 CDK5RAP3Q96JB5 506 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 MMTAG2Q9BU76 263 aaKnown RBP10.69□□□□□ -0.7
SPG11-214ENST00000558989 APOL6Q9BWW8 343 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 DBR1Q9UK59 544 aaKnown RBP10.69□□□□□ -0.7
SPG11-214ENST00000558989 MTMR6Q9Y217 621 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 INPP5FQ9Y2H2 1132 aa10.69□□□□□ -0.7
SPG11-214ENST00000558989 ASAP2O43150 1006 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 B4GALT5O43286 388 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 GAS2O43903 313 aaKnown RBP10.68□□□□□ -0.7
SPG11-214ENST00000558989 ARL2P36404 184 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 MXD4Q14582 209 aaPredicted RBP10.68□□□□□ -0.7
SPG11-214ENST00000558989 SRGAP1Q7Z6B7 1085 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.68□□□□□ -0.7
SPG11-214ENST00000558989 CRIPAKQ8N1N5 446 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 BSNDQ8WZ55 320 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 PNMA5Q96PV4 448 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 KIFC3Q9BVG8 833 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 TYW1Q9NV66 732 aaKnown RBP10.68□□□□□ -0.7
SPG11-214ENST00000558989 TMEM161AQ9NX61 479 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms