RNA–Protein interactions for RNA: ENST00000558324.1

HERC1-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 828 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-202ENST00000558324 PDE12Q6L8Q7 609 aaKnown RBP13.24□□□□□ -0.29
HERC1-202ENST00000558324 AGMOQ6ZNB7 445 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 ADHFE1Q8IWW8 467 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 URGCPQ8TCY9 931 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 TMEM169Q96HH4 297 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 TMX3Q96JJ7 454 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 MSLNLQ96KJ4 702 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 APOL6Q9BWW8 343 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 C1QTNF1Q9BXJ1 281 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 EIF2AQ9BY44 585 aaKnown RBP13.24□□□□□ -0.29
HERC1-202ENST00000558324 NRDE2Q9H7Z3 1164 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 RSAD1Q9HA92 442 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 DNAJB4Q9UDY4 337 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 HES2Q9Y543 173 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 PCDHB6Q9Y5E3 794 aa13.24□□□□□ -0.29
HERC1-202ENST00000558324 B4GALT5O43286 388 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 B4GALT3O60512 393 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 POMCP01189 267 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 XRCC6P12956 609 aaKnown RBP eCLIP13.23□□□□□ -0.293e-6■■■■□ 19.5
HERC1-202ENST00000558324 COL9A1P20849 921 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 CCT6AP40227 531 aaKnown RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 TRAPPC10P48553 1259 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 TOB1P50616 345 aaPredicted RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 NCBP1Q09161 790 aaKnown RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 SMC1AQ14683 1233 aaKnown RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 HAUS3Q68CZ6 603 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 NOTUMQ6P988 496 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 CDR2LQ86X02 465 aaPredicted RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 ZNF280BQ86YH2 543 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 SMRP1Q8NCR6 262 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 BCL7CQ8WUZ0 217 aaPredicted RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 AUTS2Q8WXX7 1259 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 NACC1Q96RE7 527 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 POLR3CQ9BUI4 534 aaPredicted RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 APOL5Q9BWW9 433 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 NGRNQ9NPE2 291 aaKnown RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 PRKAG3Q9UGI9 489 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 RAPGEFL1Q9UHV5 662 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 DBR1Q9UK59 544 aaKnown RBP13.23□□□□□ -0.29
HERC1-202ENST00000558324 KIF3AQ9Y496 699 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 IPPQ9Y573 584 aa13.23□□□□□ -0.29
HERC1-202ENST00000558324 CNTNAP2Q9UHC6 1331 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 ARHGEF35A5YM69 484 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 GALTP07902 379 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 SRGAP2BP0DMP2 458 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 ITGA4P13612 1032 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 ARF4P18085 180 aaPredicted RBP13.22□□□□□ -0.29
HERC1-202ENST00000558324 LIG1P18858 919 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 NCLP19338 710 aaKnown RBP13.22□□□□□ -0.29
HERC1-202ENST00000558324 U2AF2P26368 475 aaKnown RBP eCLIP13.22□□□□□ -0.29
HERC1-202ENST00000558324 RPA1P27694 616 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 MLH1P40692 756 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 SLC11A1P49279 550 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 COASYQ13057 564 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 PTGDRQ13258 359 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 AMHR2Q16671 573 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 PADI6Q6TGC4 694 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 MRPL10Q7Z7H8 261 aaKnown RBP13.22□□□□□ -0.29
HERC1-202ENST00000558324 VPS52Q8N1B4 723 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 C4orf32Q8N8J7 132 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 SMG8Q8ND04 991 aaKnown RBP13.22□□□□□ -0.29
HERC1-202ENST00000558324 MCPH1Q8NEM0 835 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 IGSF21Q96ID5 467 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 FAM193BQ96PV7 902 aaPredicted RBP13.22□□□□□ -0.29
HERC1-202ENST00000558324 CDCA3Q99618 268 aaPredicted RBP13.22□□□□□ -0.29
HERC1-202ENST00000558324 TRIM6Q9C030 488 aaPredicted RBP13.22□□□□□ -0.29
HERC1-202ENST00000558324 RNF39Q9H2S5 420 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 LRWD1Q9UFC0 647 aa13.22□□□□□ -0.29
HERC1-202ENST00000558324 USP15Q9Y4E8 981 aaPredicted RBP13.22□□□□□ -0.29
HERC1-202ENST00000558324 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.21□□□□□ -0.29
HERC1-202ENST00000558324 C2orf71A6NGG8 1288 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 PP2D1A8MPX8 630 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 H3BQV1 296 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 DDHD2O94830 711 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 NPTXRO95502 500 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 EYA4O95677 639 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 GJB2P29033 226 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 AXLP30530 894 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 FXR2P51116 673 aaKnown RBP eCLIP13.21□□□□□ -0.292e-6■■■■□ 20.6
HERC1-202ENST00000558324 POU5F1BQ06416 359 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 PCBP1Q15365 356 aaKnown RBP eCLIP13.21□□□□□ -0.29
HERC1-202ENST00000558324 ECM1Q16610 540 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 TMEM132AQ24JP5 1023 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 IFNLR1Q8IU57 520 aaPredicted RBP13.21□□□□□ -0.29
HERC1-202ENST00000558324 TMEM87AQ8NBN3 555 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 CNNM3Q8NE01 707 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 SNX29Q8TEQ0 813 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 RSPH1Q8WYR4 309 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 BSNDQ8WZ55 320 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 CCDC51Q96ER9 411 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 GAD1Q99259 594 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 POP1Q99575 1024 aaKnown RBP13.21□□□□□ -0.29
HERC1-202ENST00000558324 ZBP1Q9H171 429 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 CSRNP2Q9H175 543 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 NXF3Q9H4D5 531 aaKnown RBP13.21□□□□□ -0.29
HERC1-202ENST00000558324 POLD4Q9HCU8 107 aa13.21□□□□□ -0.29
HERC1-202ENST00000558324 FSD2A1L4K1 749 aa13.2□□□□□ -0.3
HERC1-202ENST00000558324 ARL5CA6NH57 179 aa13.2□□□□□ -0.3
HERC1-202ENST00000558324 C19orf67A6NJJ6 358 aa13.2□□□□□ -0.3
HERC1-202ENST00000558324 PI4K2BG5E9Z4 385 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms