RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 GFRA3O60609 400 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 DKC1O60832 514 aaKnown RBP eCLIP13.25□□□□□ -0.29
CKAP4-202ENST00000552828 CDKL5O76039 1030 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 CA8P35219 290 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 RNASELQ05823 741 aaKnown RBP13.25□□□□□ -0.29
CKAP4-202ENST00000552828 NONOQ15233 471 aaKnown RBP eCLIP13.25□□□□□ -0.29
CKAP4-202ENST00000552828 RABEP1Q15276 862 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 LONRF3Q496Y0 759 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 PPP4R3AQ6IN85 833 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 KANK3Q6NY19 840 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 KRT25Q7Z3Z0 450 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 SRGAP1Q7Z6B7 1085 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 GPR149Q86SP6 731 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 CABP7Q86V35 215 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 TMEM105Q8N8V8 129 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 ZNF579Q8NAF0 562 aaKnown RBP13.25□□□□□ -0.29
CKAP4-202ENST00000552828 TMEM87AQ8NBN3 555 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 PRPF31Q8WWY3 499 aaKnown RBP13.25□□□□□ -0.29
CKAP4-202ENST00000552828 SLC7A3Q8WY07 619 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 NLRP4Q96MN2 994 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 TBC1D32Q96NH3 1257 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 TMEM175Q9BSA9 504 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 SMOC2Q9H3U7 446 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 FAM86C1Q9NVL1 165 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 KANSL3Q9P2N6 904 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 DBR1Q9UK59 544 aaKnown RBP13.25□□□□□ -0.29
CKAP4-202ENST00000552828 INPP5FQ9Y2H2 1132 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 COL4A3BPQ9Y5P4 624 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 WDR81Q562E7 1941 aa13.25□□□□□ -0.29
CKAP4-202ENST00000552828 H0Y858 1186 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 INPPL1O15357 1258 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 DDHD2O94830 711 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 ALDH2P05091 517 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 P4HBP07237 508 aaKnown RBP13.24□□□□□ -0.29
CKAP4-202ENST00000552828 ASGR2P07307 311 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 RFC5P40937 340 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 CLCN4P51793 760 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 CLCN5P51795 746 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 AFF1P51825 1210 aaKnown RBP13.24□□□□□ -0.29
CKAP4-202ENST00000552828 NPEPPSP55786 919 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 SCRN1Q12765 414 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 INF2Q27J81 1249 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 UBXN11Q5T124 520 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 PLA2G4FQ68DD2 849 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 ASTLQ6HA08 431 aaPredicted RBP13.24□□□□□ -0.29
CKAP4-202ENST00000552828 TMC5Q6UXY8 1006 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 URGCPQ8TCY9 931 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 KLHL5Q96PQ7 755 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 EMILIN2Q9BXX0 1053 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 MINDY3Q9H8M7 445 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 SFXN1Q9H9B4 322 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 WRAP73Q9P2S5 460 aaPredicted RBP13.24□□□□□ -0.29
CKAP4-202ENST00000552828 LIMCH1Q9UPQ0 1083 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 VPS13AQ96RL7 3174 aa13.24□□□□□ -0.29
CKAP4-202ENST00000552828 TBX3O15119 743 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 ASAP2O43150 1006 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 GAS2O43903 313 aaKnown RBP13.23□□□□□ -0.29
CKAP4-202ENST00000552828 EFEMP2O95967 443 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 CNPP09543 421 aaKnown RBP13.23□□□□□ -0.29
CKAP4-202ENST00000552828 GCFC2P16383 781 aaKnown RBP13.23□□□□□ -0.29
CKAP4-202ENST00000552828 NCLP19338 710 aaKnown RBP13.23□□□□□ -0.29
CKAP4-202ENST00000552828 NBL1P41271 181 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 LAMTOR4Q0VGL1 99 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 PCBP1Q15365 356 aaKnown RBP eCLIP13.23□□□□□ -0.291e-8■■■□□ 17.4
CKAP4-202ENST00000552828 ME3Q16798 604 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 LETM2Q2VYF4 491 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 C15orf39Q6ZRI6 1047 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 OTOP3Q7RTS5 596 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 C4orf19Q8IY42 314 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 CMASQ8NFW8 434 aaPredicted RBP13.23□□□□□ -0.29
CKAP4-202ENST00000552828 FEZF2Q8TBJ5 459 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 PSPC1Q8WXF1 523 aaKnown RBP13.23□□□□□ -0.29
CKAP4-202ENST00000552828 HAS1Q92839 578 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 ACSF2Q96CM8 615 aaPredicted RBP13.23□□□□□ -0.29
CKAP4-202ENST00000552828 CEP170P1Q96L14 293 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 AIFM3Q96NN9 605 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 PHF20Q9BVI0 1012 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 RHOBTB2Q9BYZ6 727 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 GBP3Q9H0R5 595 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 RSAD1Q9HA92 442 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 UBN1Q9NPG3 1134 aa13.23□□□□□ -0.29
CKAP4-202ENST00000552828 NRP1O14786 923 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 PAPLNO95428 1278 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 SRGAP2CP0DJJ0 459 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 KLRC2P26717 231 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 EPHA7Q15375 998 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 NEK8Q86SG6 692 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 NECAB1Q8N987 351 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 SMG8Q8ND04 991 aaKnown RBP13.22□□□□□ -0.29
CKAP4-202ENST00000552828 CNNM3Q8NE01 707 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 TCP11Q8WWU5 503 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 GTF3C6Q969F1 213 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 TMEM143Q96AN5 459 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 ZSCAN31Q96LW9 406 aaPredicted RBP13.22□□□□□ -0.29
CKAP4-202ENST00000552828 MRPL17Q9NRX2 175 aaKnown RBP13.22□□□□□ -0.29
CKAP4-202ENST00000552828 KCNJ14Q9UNX9 436 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 FAN1Q9Y2M0 1017 aa13.22□□□□□ -0.29
CKAP4-202ENST00000552828 RIF1Q5UIP0 2472 aaKnown RBP13.22□□□□□ -0.29
CKAP4-202ENST00000552828 SPTBN4Q9H254 2564 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 CCDC194A0A1B0GVG4 234 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms